NR_4.0_21280.13

Members (41)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	6SGC\|1\|A1 (rep)	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome stalled on a poly(A) tail	Electron microscopy	2.8	2019-12-04
2	6YAL\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 48S late-stage initiation complex with beta-globin mRNA	Electron microscopy	3	2020-04-08
3	6R5Q\|1\|K	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	Electron microscopy	3	2019-07-10
4	6P5I\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	Electron microscopy	3.1	2019-09-18
5	6P5K\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	Electron microscopy	3.1	2019-09-18
6	6P5J\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	Electron microscopy	3.1	2019-09-18
7	6P4G\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	Electron microscopy	3.1	2019-09-18
8	6R6P\|1\|K	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	Electron microscopy	3.1	2019-07-10
9	6P4H\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	Electron microscopy	3.2	2019-09-18
10	6P5N\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	Electron microscopy	3.2	2019-09-25
11	6D9J\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	Electron microscopy	3.2	2018-06-06
12	5LZS\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	Electron microscopy	3.31	2016-11-30
13	6W2T\|1\|a	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)	Electron microscopy	3.36	2020-04-22
14	6MTD\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	Electron microscopy	3.3	2018-11-21
15	5LZV\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	Electron microscopy	3.35	2016-11-30
16	6D90\|1\|2	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	Electron microscopy	3.2	2018-06-06
17	6YAN\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 48S late-stage translation initiation complex with histone 4 mRNA	Electron microscopy	3.48	2020-04-08
18	6MTC\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	Electron microscopy	3.4	2018-11-21
19	6MTE\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	Electron microscopy	3.4	2018-11-21
20	6W2S\|1\|A	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)	Electron microscopy	3.47	2020-04-22
21	6GZ5\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	Electron microscopy	3.5	2018-12-05
22	5LZZ\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	Electron microscopy	3.47	2016-11-30
23	5LZW\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	Electron microscopy	3.53	2016-11-30
24	5LZX\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	Electron microscopy	3.67	2016-11-30
25	6GZ3\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	Electron microscopy	3.6	2018-12-05
26	6GZ4\|1\|B1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	Electron microscopy	3.6	2018-12-05
27	5LZT\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	Electron microscopy	3.65	2016-11-30
28	6YAM\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA	Electron microscopy	3.6	2020-04-08
29	6MTB\|1\|9	Small subunit ribosomal RNA	18S rRNA	Oryctolagus cuniculus	Eukarya	RF01960	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	Electron microscopy	3.6	2018-11-21
30	6HCJ\|1\|A2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	Electron microscopy	3.8	2018-10-17
31	6R6G\|1\|K	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	Electron microscopy	3.7	2019-07-10
32	5LZU\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian ribosomal termination complex with accommodated eRF1	Electron microscopy	3.75	2016-11-30
33	6HCF\|1\|A1	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	Electron microscopy	3.9	2018-10-17
34	6R7Q\|1\|K	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	Electron microscopy	3.9	2019-07-10
35	3JAH\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	Electron microscopy	3.45	2015-08-12
36	5LZY\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	Electron microscopy	3.99	2016-11-30
37	5FLX\|1\|1	Small subunit ribosomal RNA	18S RRNA	Oryctolagus cuniculus	Eukarya	RF01960	Mammalian 40S HCV-IRES complex	Electron microscopy	3.9	2015-12-23
38	3JAG\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	Electron microscopy	3.65	2015-08-12
39	3JAI\|1\|9	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	Electron microscopy	3.65	2015-08-12
40	3JAN\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the scanning state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	2015-08-05
41	3JAJ\|1\|S2	Small subunit ribosomal RNA	18S ribosomal RNA	Oryctolagus cuniculus	Eukarya	RF01960	Structure of the engaged state of the mammalian SRP-ribosome complex	Electron microscopy	3.75	2015-08-05

Release history

Release	3.140	3.141	3.142	3.143	3.144	3.145	3.146	3.147	3.148	3.149	3.150	3.151	3.152	3.153	3.154
Date	2020-08-19	2020-08-26	2020-09-02	2020-09-09	2020-09-16	2020-09-23	2020-09-30	2020-10-07	2020-10-14	2020-10-21	2020-10-28	2020-11-04	2020-11-11	2020-11-18	2020-11-25

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_21280.13	NR_4.0_21280.12	3.140	(41) 6HCJ\|1\|A2, 6P5J\|1\|2, 3JAN\|1\|S2, 6W2S\|1\|A, 5LZY\|1\|9, 6HCF\|1\|A1, 6P5I\|1\|2, 3JAJ\|1\|S2, 6SGC\|1\|A1, 5LZX\|1\|9, 6GZ5\|1\|B1, 6P4H\|1\|2, 3JAI\|1\|9, 6R7Q\|1\|K, 5LZW\|1\|9, 6YAN\|1\|2, 6GZ3\|1\|B1, 6MTE\|1\|9, 3JAG\|1\|9, 6R6G\|1\|K, 5LZU\|1\|9, 6D9J\|1\|2, 6MTD\|1\|9, 6R5Q\|1\|K, 5LZT\|1\|9, 6YAM\|1\|2, 6MTC\|1\|9, 6P5N\|1\|2, 5LZS\|1\|9, 6YAL\|1\|2, 6D90\|1\|2, 6MTB\|1\|9, 6P5K\|1\|2, 5FLX\|1\|1, 6W2T\|1\|a, 5LZZ\|1\|9, 6GZ4\|1\|B1, 6P4G\|1\|2, 3JAH\|1\|9, 6R6P\|1\|K, 5LZV\|1\|9	(0)	(4) 3J73\|1\|S2, 1VX5\|1\|2, 1VX2\|1\|2, 3J74\|1\|S2

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_21280.13	NR_4.0_21280.14	3.155	(41) 3JAN\|1\|S2, 5LZY\|1\|9, 6HCJ\|1\|A2, 6P5J\|1\|2, 6W2S\|1\|A, 3JAJ\|1\|S2, 5LZX\|1\|9, 6HCF\|1\|A1, 6P5I\|1\|2, 6SGC\|1\|A1, 3JAI\|1\|9, 5LZW\|1\|9, 6GZ5\|1\|B1, 6P4H\|1\|2, 6R7Q\|1\|K, 3JAH\|1\|9, 5LZV\|1\|9, 6GZ4\|1\|B1, 6P4G\|1\|2, 6R6P\|1\|K, 6YAN\|1\|2, 3JAG\|1\|9, 5LZU\|1\|9, 6GZ3\|1\|B1, 6MTE\|1\|9, 6R6G\|1\|K, 5LZT\|1\|9, 6D9J\|1\|2, 6MTD\|1\|9, 6R5Q\|1\|K, 6YAM\|1\|2, 5LZS\|1\|9, 6D90\|1\|2, 6MTC\|1\|9, 6P5N\|1\|2, 6YAL\|1\|2, 5FLX\|1\|1, 5LZZ\|1\|9, 6MTB\|1\|9, 6P5K\|1\|2, 6W2T\|1\|a	(0)	(2) 7JQB\|1\|A, 7JQC\|1\|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	6YAN\|1\|2	Mammalian 48S late-stage translation initiation complex with histone 4 mRNA	ELECTRON MICROSCOPY	3.48	1743
2	6YAL\|1\|2	Mammalian 48S late-stage initiation complex with beta-globin mRNA	ELECTRON MICROSCOPY	3	1743
3	6YAM\|1\|2	Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA	ELECTRON MICROSCOPY	3.6	1742
4	3JAH\|1\|9	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon	ELECTRON MICROSCOPY	3.45	1719
5	3JAG\|1\|9	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon	ELECTRON MICROSCOPY	3.65	1719
6	3JAI\|1\|9	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon	ELECTRON MICROSCOPY	3.65	1719
7	3JAJ\|1\|S2	Structure of the engaged state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	1742
8	3JAN\|1\|S2	Structure of the scanning state of the mammalian SRP-ribosome complex	ELECTRON MICROSCOPY	3.75	1742
9	6GZ5\|1\|B1	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)	ELECTRON MICROSCOPY	3.5	1708
10	6HCJ\|1\|A2	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs	ELECTRON MICROSCOPY	3.8	1740
11	6HCF\|1\|A1	Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon	ELECTRON MICROSCOPY	3.9	1732
12	6D90\|1\|2	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.	ELECTRON MICROSCOPY	3.2	1697
13	6P5N\|1\|2	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1	ELECTRON MICROSCOPY	3.2	1697
14	6SGC\|1\|A1	Rabbit 80S ribosome stalled on a poly(A) tail	ELECTRON MICROSCOPY	2.8	1697
15	5LZY\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.	ELECTRON MICROSCOPY	3.99	1698
16	5LZZ\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)	ELECTRON MICROSCOPY	3.47	1698
17	5LZX\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.	ELECTRON MICROSCOPY	3.67	1698
18	5LZW\|1\|9	Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.	ELECTRON MICROSCOPY	3.53	1698
19	5LZU\|1\|9	Structure of the mammalian ribosomal termination complex with accommodated eRF1	ELECTRON MICROSCOPY	3.75	1698
20	5LZV\|1\|9	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.	ELECTRON MICROSCOPY	3.35	1698
21	5LZT\|1\|9	Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.	ELECTRON MICROSCOPY	3.65	1698
22	6MTB\|1\|9	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)	ELECTRON MICROSCOPY	3.6	1664
23	6MTC\|1\|9	Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)	ELECTRON MICROSCOPY	3.4	1664
24	6R7Q\|1\|K	Structure of XBP1u-paused ribosome nascent chain complex with Sec61.	ELECTRON MICROSCOPY	3.9	1698
25	6R5Q\|1\|K	Structure of XBP1u-paused ribosome nascent chain complex (post-state)	ELECTRON MICROSCOPY	3	1698
26	6R6G\|1\|K	Structure of XBP1u-paused ribosome nascent chain complex with SRP.	ELECTRON MICROSCOPY	3.7	1698
27	5LZS\|1\|9	Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B	ELECTRON MICROSCOPY	3.31	1697
28	6R6P\|1\|K	Structure of XBP1u-paused ribosome nascent chain complex (rotated state)	ELECTRON MICROSCOPY	3.1	1698
29	6P4H\|1\|2	Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	ELECTRON MICROSCOPY	3.2	1697
30	6P4G\|1\|2	Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	ELECTRON MICROSCOPY	3.1	1697
31	6P5K\|1\|2	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)	ELECTRON MICROSCOPY	3.1	1697
32	6P5I\|1\|2	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)	ELECTRON MICROSCOPY	3.1	1697
33	6P5J\|1\|2	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)	ELECTRON MICROSCOPY	3.1	1697
34	6MTE\|1\|9	Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)	ELECTRON MICROSCOPY	3.4	1664
35	6MTD\|1\|9	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)	ELECTRON MICROSCOPY	3.3	1692
36	6GZ3\|1\|B1	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)	ELECTRON MICROSCOPY	3.6	1708
37	6GZ4\|1\|B1	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)	ELECTRON MICROSCOPY	3.6	1708
38	5FLX\|1\|1	Mammalian 40S HCV-IRES complex	ELECTRON MICROSCOPY	3.9	1708
39	6W2T\|1\|a	Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)	ELECTRON MICROSCOPY	3.36	1697
40	6W2S\|1\|A	Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)	ELECTRON MICROSCOPY	3.47	1697
41	6D9J\|1\|2	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.	ELECTRON MICROSCOPY	3.2	1697

Equivalence class NR_4.0_21280.13 Obsolete

Release history

Parents

Children