Equivalence class NR_4.0_25585.2 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 4Z4D|1|B+ 4Z4D|1|D (rep) | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*G)-3') | synthetic construct | Human Argonaute2 Bound to t1-G Target RNA | X-ray diffraction | 1.6 | 2015-09-23 | |||
2 | 4Z4E|1|B+ 4Z4E|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*U)-3') | synthetic construct | Human Argonaute2 Bound to t1-U Target RNA | X-ray diffraction | 1.8 | 2015-09-23 | |||
3 | 4W5O|1|B+ 4W5O|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*AP*A)-3') | synthetic construct | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9 | X-ray diffraction | 1.8 | 2014-11-12 | |||
4 | 4Z4C|1|B+ 4Z4C|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*C)-3') | synthetic construct | Human Argonaute2 Bound to t1-C Target RNA | X-ray diffraction | 2.3 | 2015-09-23 | |||
5 | 4Z4H|1|B+ 4Z4H|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-3') | synthetic construct | Human Argonaute2 A481T Mutant Bound to t1-A Target RNA | X-ray diffraction | 2.5 | 2015-09-23 | |||
6 | 4Z4I|1|B+ 4Z4I|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-3') | synthetic construct | Human Argonaute2 A481T Mutant Bound to t1-G Target RNA | X-ray diffraction | 2.8 | 2015-09-23 | |||
7 | 4Z4G|1|B+ 4Z4G|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-D(P*(IMP))-3') | synthetic construct | Human Argonaute2 Bound to t1-Inosine Target RNA | X-ray diffraction | 2.7 | 2015-09-23 | |||
8 | 4W5T|1|B+ 4W5T|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*UP*U)-3'), RNA (5'-R(*AP*CP*AP*UP*GP*UP*GP*AP*AP*A)-3') | synthetic construct | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7 | X-ray diffraction | 2.5 | 2014-11-12 | |||
9 | 4Z4F|1|B+ 4Z4F|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*(N6G)P*A)-3') | synthetic construct | Human Argonaute2 Bound to t1-DAP Target RNA | X-ray diffraction | 2.8 | 2015-09-23 | |||
10 | 4W5R|1|B+ 4W5R|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*UP*U)-3'), RNA (5'-R(P*AP*AP*UP*GP*UP*GP*AP*AP*A)-3') | synthetic construct | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target) | X-ray diffraction | 2.5 | 2014-11-12 | |||
11 | 4W5Q|1|B+ 4W5Q|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*U)-3'), RNA (5'-R(*AP*AP*AP*UP*GP*UP*GP*AP*AP*A)-3') | synthetic construct | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 | X-ray diffraction | 3.1 | 2014-11-12 |
Release history
Release | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
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Date | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_4.0_25585.2 | NR_4.0_25585.1 | 2.93 | (11) 4W5R|1|B+4W5R|1|D, 4Z4H|1|B+4Z4H|1|D, 4Z4C|1|B+4Z4C|1|D, 4Z4E|1|B+4Z4E|1|D, 4W5Q|1|B+4W5Q|1|D, 4Z4G|1|B+4Z4G|1|D, 4W5T|1|B+4W5T|1|D, 4Z4I|1|B+4Z4I|1|D, 4Z4D|1|B+4Z4D|1|D, 4W5O|1|B+4W5O|1|D, 4Z4F|1|B+4Z4F|1|D | (0) | (1) 4W5N|1|B |
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_4.0_25585.2 | NR_4.0_25585.3 | 3.18 | (11) 4W5T|1|B+4W5T|1|D, 4W5R|1|B+4W5R|1|D, 4W5Q|1|B+4W5Q|1|D, 4W5O|1|B+4W5O|1|D, 4Z4I|1|B+4Z4I|1|D, 4Z4H|1|B+4Z4H|1|D, 4Z4G|1|B+4Z4G|1|D, 4Z4F|1|B+4Z4F|1|D, 4Z4E|1|B+4Z4E|1|D, 4Z4D|1|B+4Z4D|1|D, 4Z4C|1|B+4Z4C|1|D | (0) | (1) 6CBD|1|B+6CBD|1|C |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 4Z4E|1|B+4Z4E|1|D | Human Argonaute2 Bound to t1-U Target RNA | X-RAY DIFFRACTION | 1.8 | 19 |
2 | 4Z4C|1|B+4Z4C|1|D | Human Argonaute2 Bound to t1-C Target RNA | X-RAY DIFFRACTION | 2.3 | 19 |
3 | 4W5Q|1|B+4W5Q|1|D | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 | X-RAY DIFFRACTION | 3.1 | 18 |
4 | 4Z4F|1|B+4Z4F|1|D | Human Argonaute2 Bound to t1-DAP Target RNA | X-RAY DIFFRACTION | 2.8 | 18 |
5 | 4Z4D|1|B+4Z4D|1|D | Human Argonaute2 Bound to t1-G Target RNA | X-RAY DIFFRACTION | 1.6 | 20 |
6 | 4Z4I|1|B+4Z4I|1|D | Human Argonaute2 A481T Mutant Bound to t1-G Target RNA | X-RAY DIFFRACTION | 2.8 | 20 |
7 | 4Z4G|1|B+4Z4G|1|D | Human Argonaute2 Bound to t1-Inosine Target RNA | X-RAY DIFFRACTION | 2.7 | 20 |
8 | 4Z4H|1|B+4Z4H|1|D | Human Argonaute2 A481T Mutant Bound to t1-A Target RNA | X-RAY DIFFRACTION | 2.5 | 20 |
9 | 4W5O|1|B+4W5O|1|D | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9 | X-RAY DIFFRACTION | 1.8 | 20 |
10 | 4W5R|1|B+4W5R|1|D | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target) | X-RAY DIFFRACTION | 2.5 | 11 |
11 | 4W5T|1|B+4W5T|1|D | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7 | X-RAY DIFFRACTION | 2.5 | 16 |
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