Equivalence class NR_4.0_25780.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5BWS|1|C+ 5BWS|1|D (rep) | RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F) | X-RAY DIFFRACTION | 2.6 | 2016-06-22 | ||||
| 2 | 5BWS|1|A+ 5BWS|1|B | RNA (5'-D(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F) | X-RAY DIFFRACTION | 2.6 | 2016-06-22 | ||||
| 3 | 5BXK|1|C+ 5BXK|1|D | RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F) | X-RAY DIFFRACTION | 3.1 | 2016-06-22 | ||||
| 4 | 5BXK|1|A+ 5BXK|1|B | RNA (5'-D(P*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F) | X-RAY DIFFRACTION | 3.1 | 2016-06-22 | ||||
| 5 | 4WCP|1|A+ 4WCP|1|B+ 4WCP|1|C | RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site | X-RAY DIFFRACTION | 2.4 | 2015-09-09 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_25780.1 | NR_all_50460.1 | 2.81 | (1) 4WCP|1|A+4WCP|1|B+4WCP|1|C | (4) 5BWS|1|A+5BWS|1|B, 5BWS|1|C+5BWS|1|D, 5BXK|1|A+5BXK|1|B, 5BXK|1|C+5BXK|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_25780.1 | NR_4.0_97151.1 | 2.93 | (5) 5BXK|1|A+5BXK|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 5BXK|1|C+5BXK|1|D, 5BWS|1|A+5BWS|1|B, 5BWS|1|C+5BWS|1|D | (0) | (29) 2BEE|1|A+2BEE|1|B, 2PWT|1|A+2PWT|1|B, 4GPY|1|A+4GPY|1|B, 4WCS|1|A+4WCS|1|B, 2ET3|1|A+2ET3|1|B, 3TD1|1|B+3TD1|1|A, 4P3S|1|B+4P3S|1|A, 1MWL|1|A+1MWL|1|B, 4F8V|1|A+4F8V|1|B, 2BE0|1|A+2BE0|1|B, 2F4T|1|B+2F4T|1|A, 4GPX|1|A+4GPX|1|B, 4WCR|1|A+4WCR|1|B, 2ESJ|1|A+2ESJ|1|B, 3S4P|1|A+3S4P|1|B, 4P20|1|A+4P20|1|B, 1LC4|1|A+1LC4|1|B, 4F8U|1|A+4F8U|1|B, 1YRJ|1|A+1YRJ|1|B, 2ET5|1|A+2ET5|1|B, 4GPW|1|A+4GPW|1|B, 4WCQ|1|A+4WCQ|1|B, 2ESI|1|A+2ESI|1|B, 3BNL|1|A+3BNL|1|B, 4K32|1|A+4K32|1|B, 1J7T|1|A+1J7T|1|B, 3WRU|1|A+3WRU|1|B, 2ET4|1|A+2ET4|1|B, 4PDQ|1|A+4PDQ|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5BXK|1|C+5BXK|1|D | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F) | X-RAY DIFFRACTION | 3.1 | 23 |
| 2 | 5BWS|1|C+5BWS|1|D | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F) | X-RAY DIFFRACTION | 2.6 | 23 |
| 3 | 4WCP|1|A+4WCP|1|B+4WCP|1|C | Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site | X-RAY DIFFRACTION | 2.4 | 22 |
| 4 | 5BXK|1|A+5BXK|1|B | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F) | X-RAY DIFFRACTION | 3.1 | 22 |
| 5 | 5BWS|1|A+5BWS|1|B | Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (axial 4'-F) | X-RAY DIFFRACTION | 2.6 | 23 |