Equivalence class NR_4.0_30457.11 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 6J6G|1|D (rep) | U5 spliceosomal RNA | U5 snRNA, ACT1 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom | Electron microscopy | 3.2 | 2019-04-24 |
2 | 6BK8|1|5 | U5 spliceosomal RNA | U5 snRNA, RNA (34-MER) | Saccharomyces cerevisiae | Eukarya | RF00020 | S. cerevisiae spliceosomal post-catalytic P complex | Electron microscopy | 3.3 | 2018-02-21 |
3 | 5GMK|1|D | U5 spliceosomal RNA | U5 snRNA, 5'-Exon | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | Electron microscopy | 3.4 | 2016-08-17 |
4 | 5Y88|1|B | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom | Electron microscopy | 3.46 | 2018-08-01 |
5 | 6EXN|1|5 | U5 spliceosomal RNA | U5 snRNA, Ligated exons: UBC4 mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Post-catalytic P complex spliceosome with 3' splice site docked | Electron microscopy | 3.7 | 2018-01-17 |
6 | 5YLZ|1|B | U5 spliceosomal RNA | U5 snRNA, mRNA/intron lariat, U2 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | Electron microscopy | 3.6 | 2018-07-18 |
7 | 6J6H|1|D | U5 spliceosomal RNA | U5 snRNA, ACT1 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom | Electron microscopy | 3.6 | 2019-04-24 |
8 | 5LJ3|1|U | U5 spliceosomal RNA | U5 snRNA (small nuclear RNA), Exon 1 (5' exon) of UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of the core of the yeast spliceosome immediately after branching | Electron microscopy | 3.8 | 2016-08-03 |
9 | 5ZWM|1|B | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part) | Electron microscopy | 3.4 | 2018-08-29 |
10 | 5GAN|1|U | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom | Electron microscopy | 3.7 | 2016-01-27 |
11 | 5MPS|1|5 | U5 spliceosomal RNA | U5 snRNA, UBC4 gene exon | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of a spliceosome remodeled for exon ligation | Electron microscopy | 3.85 | 2017-01-18 |
12 | 6J6N|1|D | U5 spliceosomal RNA | U5 snRNA, UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom | Electron microscopy | 3.86 | 2019-04-24 |
13 | 6J6Q|1|D | U5 spliceosomal RNA | U5 snRNA, UBC4 pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom | Electron microscopy | 3.7 | 2019-04-24 |
14 | 5WSG|1|D | U5 spliceosomal RNA | U5 snRNA, 5'-exon | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | Electron microscopy | 4 | 2017-01-25 |
15 | 5GAM|1|U | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP | Electron microscopy | 3.7 | 2016-02-03 |
16 | 5ZWO|1|B | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom | Electron microscopy | 3.9 | 2018-08-29 |
17 | 3JCM|1|F | U5 spliceosomal RNA | SNR7-L snRNA, SNR6 snRNA, pre-mRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP | Electron microscopy | 3.8 | 2016-02-24 |
Release history
Release | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
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Date | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 |
Parents
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_4.0_30457.11 | NR_4.0_30457.12 | 3.99 | (12) 5WSG|1|D, 6BK8|1|5, 6J6H|1|D, 5GMK|1|D, 5LJ3|1|U, 5YLZ|1|B, 6J6G|1|D, 6J6Q|1|D, 6J6N|1|D, 5MPS|1|5, 5Y88|1|B, 6EXN|1|5 | (5) 5GAM|1|U, 5GAN|1|U, 5ZWM|1|B, 3JCM|1|F, 5ZWO|1|B | (0) |
NR_4.0_30457.11 | NR_4.0_71335.1 | 3.99 | (3) 3JCM|1|F, 5ZWM|1|B, 5ZWO|1|B | (14) 5MPS|1|5, 5Y88|1|B, 6BK8|1|5, 6J6Q|1|D, 5GAN|1|U, 6J6G|1|D, 5LJ3|1|U, 6J6N|1|D, 5WSG|1|D, 5YLZ|1|B, 5GAM|1|U, 6EXN|1|5, 5GMK|1|D, 6J6H|1|D | (0) |
NR_4.0_30457.11 | NR_4.0_97263.1 | 3.99 | (2) 5GAM|1|U, 5GAN|1|U | (15) 6EXN|1|5, 6J6G|1|D, 5WSG|1|D, 5MPS|1|5, 6J6H|1|D, 6J6N|1|D, 5Y88|1|B, 5YLZ|1|B, 6J6Q|1|D, 5ZWM|1|B, 5ZWO|1|B, 5GMK|1|D, 3JCM|1|F, 6BK8|1|5, 5LJ3|1|U | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 3JCM|1|F | Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP | ELECTRON MICROSCOPY | 3.8 | 113 |
2 | 5ZWM|1|B | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part) | ELECTRON MICROSCOPY | 3.4 | 175 |
3 | 5ZWO|1|B | Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom | ELECTRON MICROSCOPY | 3.9 | 175 |
4 | 6EXN|1|5 | Post-catalytic P complex spliceosome with 3' splice site docked | ELECTRON MICROSCOPY | 3.7 | 171 |
5 | 6J6H|1|D | Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 179 |
6 | 6J6G|1|D | Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom | ELECTRON MICROSCOPY | 3.2 | 179 |
7 | 6J6N|1|D | Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom | ELECTRON MICROSCOPY | 3.86 | 179 |
8 | 6J6Q|1|D | Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstrom | ELECTRON MICROSCOPY | 3.7 | 179 |
9 | 6BK8|1|5 | S. cerevisiae spliceosomal post-catalytic P complex | ELECTRON MICROSCOPY | 3.3 | 103 |
10 | 5YLZ|1|B | Cryo-EM Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 117 |
11 | 5WSG|1|D | Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution | ELECTRON MICROSCOPY | 4 | 117 |
12 | 5GMK|1|D | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | ELECTRON MICROSCOPY | 3.4 | 117 |
13 | 5Y88|1|B | Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom | ELECTRON MICROSCOPY | 3.46 | 117 |
14 | 5MPS|1|5 | Structure of a spliceosome remodeled for exon ligation | ELECTRON MICROSCOPY | 3.85 | 141 |
15 | 5LJ3|1|U | Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 141 |
16 | 5GAN|1|U | The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom | ELECTRON MICROSCOPY | 3.7 | 141 |
17 | 5GAM|1|U | Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP | ELECTRON MICROSCOPY | 3.7 | 141 |