Equivalence class NR_4.0_33912.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7RIQ|1|R (rep) | RNA | synthetic construct | RNA polymerase II elongation complex scaffold 1 without polyamide | X-ray diffraction | 3 | 2022-01-12 | |||
| 2 | 7RIM|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 | X-ray diffraction | 2.9 | 2022-01-12 | |||
| 3 | 3S17|1|R | RNA (5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*G)-3') | RNA Polymerase II Initiation Complex with a 9-nt RNA | X-ray diffraction | 3.2 | 2011-08-10 | ||||
| 4 | 6UPY|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E | X-ray diffraction | 3.4 | 2020-06-10 | |||
| 5 | 6UQ2|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with dG in state 1 | X-ray diffraction | 3.2 | 2020-06-10 | |||
| 6 | 6UPX|1|R | RNA | synthetic construct | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 | X-ray diffraction | 3.4 | 2020-06-10 | |||
| 7 | 2E2J|1|R | 5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3' | synthetic construct | RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP | X-ray diffraction | 3.5 | 2006-12-12 | |||
| 8 | 8SY7|1|R | RNA oligomer | synthetic construct | E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-STP base pair in the active site | Electron microscopy | 2.65 | 2023-12-27 | |||
| 9 | 8SY5|1|R | RNA oligomer | synthetic construct | E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dS-BTP base pair in the active site | Electron microscopy | 2.7 | 2023-12-27 | |||
| 10 | 6O6C|1|K | RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*G)-3') | Saccharomyces cerevisiae | RNA polymerase II elongation complex arrested at a CPD lesion | Electron microscopy | 3.1 | 2019-06-26 | |||
| 11 | 8SY6|1|R | RNA oligomer | synthetic construct | E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-UTP base pair in the active site | Electron microscopy | 3.28 | 2023-12-27 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8SY6|1|R | E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-UTP base pair in the active site | ELECTRON MICROSCOPY | 3.28 | 9 |
| 2 | 8SY5|1|R | E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dS-BTP base pair in the active site | ELECTRON MICROSCOPY | 2.7 | 9 |
| 3 | 8SY7|1|R | E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-STP base pair in the active site | ELECTRON MICROSCOPY | 2.65 | 9 |
| 4 | 3S17|1|R | RNA Polymerase II Initiation Complex with a 9-nt RNA | X-RAY DIFFRACTION | 3.2 | 9 |
| 5 | 7RIQ|1|R | RNA polymerase II elongation complex scaffold 1 without polyamide | X-RAY DIFFRACTION | 3 | 9 |
| 6 | 6UQ2|1|R | RNA polymerase II elongation complex with dG in state 1 | X-RAY DIFFRACTION | 3.2 | 9 |
| 7 | 7RIM|1|R | RNA polymerase II elongation complex with hairpin polyamide Py-Im 1, scaffold 1 | X-RAY DIFFRACTION | 2.9 | 9 |
| 8 | 6UPX|1|R | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 1 | X-RAY DIFFRACTION | 3.4 | 9 |
| 9 | 6UPY|1|R | RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E | X-RAY DIFFRACTION | 3.4 | 9 |
| 10 | 2E2J|1|R | RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP | X-RAY DIFFRACTION | 3.5 | 9 |
| 11 | 6O6C|1|K | RNA polymerase II elongation complex arrested at a CPD lesion | ELECTRON MICROSCOPY | 3.1 | 9 |