#IFECompound(s)RNA source organismTitleMethodResolutionDate
12NVQ|1|R (rep)5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.92006-12-12
26UPZ|1|RRNAsynthetic constructRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3X-RAY DIFFRACTION3.12020-06-10
32NVX|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.62006-12-19
42E2I|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.412006-12-19
56UQ0|1|RRNAsynthetic constructRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4X-RAY DIFFRACTION3.562020-06-10
67KEE|1|RRNARNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-siteX-RAY DIFFRACTION3.452021-06-23
72E2H|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'RNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.952006-12-12
87KED|1|RRNARNA polymerase II elongation complex with unnatural base dTPT3X-RAY DIFFRACTION3.62021-06-23
97KEF|1|RRNARNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing stateX-RAY DIFFRACTION3.892021-06-23
101SFO|1|RRNA STRANDRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.612004-03-02
111R9T|1|RRNA strandRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.52004-11-16
122YU9|1|R5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'synthetic constructRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.42007-04-24
137OO3|1|PRNAPol II-CSB-CSA-DDB1-UVSSA (Structure1)ELECTRON MICROSCOPY2.82021-10-06
146H67|1|RRNASaccharomyces cerevisiaeYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)ELECTRON MICROSCOPY3.62018-08-29

Release history

Release3.199
Date2021-10-06

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_34359.6NR_4.0_34359.53.199(13) 7KEF|1|R, 7KEE|1|R, 7KED|1|R, 6UQ0|1|R, 6UPZ|1|R, 6H67|1|R, 2YU9|1|R, 2NVX|1|R, 2NVQ|1|R, 2E2I|1|R, 2E2H|1|R, 1SFO|1|R, 1R9T|1|R(1) 7OO3|1|P(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_34359.6NR_4.0_34359.73.200(14) 7OO3|1|P, 7KEF|1|R, 7KEE|1|R, 7KED|1|R, 6UQ0|1|R, 6UPZ|1|R, 6H67|1|R, 2YU9|1|R, 2NVX|1|R, 2NVQ|1|R, 2E2I|1|R, 2E2H|1|R, 1SFO|1|R, 1R9T|1|R(0) (1) 7OOB|1|P

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17KEF|1|RRNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing stateX-RAY DIFFRACTION3.8910
22E2H|1|RRNA polymerase II elongation complex at 5 mM Mg2+ with GTPX-RAY DIFFRACTION3.9510
32NVX|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTPX-RAY DIFFRACTION3.610
42E2I|1|RRNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTPX-RAY DIFFRACTION3.4110
52YU9|1|RRNA polymerase II elongation complex in 150 mm MG+2 with UTPX-RAY DIFFRACTION3.410
62NVQ|1|RRNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTPX-RAY DIFFRACTION2.910
77OO3|1|PPol II-CSB-CSA-DDB1-UVSSA (Structure1)ELECTRON MICROSCOPY2.810
86UQ0|1|RRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4X-RAY DIFFRACTION3.569
97KED|1|RRNA polymerase II elongation complex with unnatural base dTPT3X-RAY DIFFRACTION3.610
107KEE|1|RRNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-siteX-RAY DIFFRACTION3.4510
116H67|1|RYeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)ELECTRON MICROSCOPY3.69
121SFO|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEXX-RAY DIFFRACTION3.6110
131R9T|1|RRNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDEX-RAY DIFFRACTION3.510
146UPZ|1|RRNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3X-RAY DIFFRACTION3.110