#PDBTitleRNA source organismCompoundsMethodResolutionDate
15J01|1|A (rep)Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.Oceanobacillus iheyensisgroup II intron lariatX-RAY DIFFRACTION3.392016-12-14
24FAW|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentOceanobacillus iheyensisGroup IIC intron, 5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3'X-RAY DIFFRACTION2.72012-11-14
34FAU|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonOceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION2.872012-11-14
44Y1O|1|AOceanobacillus iheyensis group II intron domain 1Oceanobacillus iheyensisgroup II intron, domain 1, group II intron, domain 1X-RAY DIFFRACTION2.952015-10-14
55J02|1|AStructure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.Oceanobacillus iheyensisGROUP II INTRON LARIAT, 5' EXON ANALOG (5'-R(*CP*UP*GP*UP*UP*AP*(5MU))-3')X-RAY DIFFRACTION3.492016-12-14
64Y1N|1|AOceanobacillus iheyensis group II intron domain 1 with iridium hexamineOceanobacillus iheyensisgroup II intron, domain 1, group II intron, domain 1X-RAY DIFFRACTION32015-10-14
73G78|1|AInsight into group II intron catalysis from revised crystal structureOceanobacillus iheyensisGroup II intron, Ligated EXON productX-RAY DIFFRACTION2.82010-02-16
83IGI|1|ATertiary Architecture of the Oceanobacillus Iheyensis Group II IntronGroup IIC intron, 5'-R(*CP*GP*CP*UP*CP*UP*AP*CP*UP*CP*UP*AP*U)-3'X-RAY DIFFRACTION3.122009-12-22
94Y1N|1|BOceanobacillus iheyensis group II intron domain 1 with iridium hexamineOceanobacillus iheyensisgroup II intron, domain 1, group II intron, domain 1X-RAY DIFFRACTION32015-10-14
104E8Q|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION2.842012-11-14
114E8N|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION2.962012-11-14
124E8K|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateOceanobacillus iheyensisGroup IIC intron, 5'-R(*CP*G*AP*UP*UP*UP*AP*UP*UP*A)-3'X-RAY DIFFRACTION3.032012-11-14
134FAR|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonOceanobacillus iheyensisGruup IIC intron, Group IIC intronX-RAY DIFFRACTION2.862012-11-14
144Y1O|1|BOceanobacillus iheyensis group II intron domain 1Oceanobacillus iheyensisgroup II intron, domain 1, group II intron, domain 1X-RAY DIFFRACTION2.952015-10-14
154E8T|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)Oceanobacillus iheyensisGroup IIC intron, 5'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3'X-RAY DIFFRACTION3.342012-11-14
164FB0|1|AStructure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.222012-11-14
174E8P|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.282012-11-14
184FAQ|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonOceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.112012-11-14
193BWP|1|ACrystal structure of a self-spliced group II intronGroup IIC intronX-RAY DIFFRACTION3.12008-04-15
204E8R|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.362012-11-14
214DS6|1|ACrystal structure of a group II intron in the pre-catalytic stateOceanobacillus iheyensisMutant Group IIC IntronX-RAY DIFFRACTION3.642012-04-18
224E8M|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.52012-11-14
233EOH|1|ARefined group II intron structureGroup IIC intron, 5'-R(*UP*UP*AP*UP*UP*A)-3'X-RAY DIFFRACTION3.122008-10-28
244FAX|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.12012-11-14
253EOG|1|ACo-crystallization showing exon recognition by a group II intronGroup IIC intron, 5'-R(*UP*UP*AP*UP*UP*A)-3'X-RAY DIFFRACTION3.392008-10-28
264E8V|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+Oceanobacillus iheyensisGroup IIC intronX-RAY DIFFRACTION3.992012-11-14

Release history

Release2.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.150
Date2016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-14

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14FAX|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+X-RAY DIFFRACTION3.1392
24FAW|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-RAY DIFFRACTION2.7390
34FAU|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.87395
44FAR|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.86390
54E8Q|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-RAY DIFFRACTION2.84393
64E8N|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-RAY DIFFRACTION2.96393
74E8R|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+X-RAY DIFFRACTION3.36393
84E8P|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+X-RAY DIFFRACTION3.28393
94E8M|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.5394
104FB0|1|AStructure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.22393
113G78|1|AInsight into group II intron catalysis from revised crystal structureX-RAY DIFFRACTION2.8389
123IGI|1|ATertiary Architecture of the Oceanobacillus Iheyensis Group II IntronX-RAY DIFFRACTION3.12389
134E8T|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)X-RAY DIFFRACTION3.34388
144E8K|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateX-RAY DIFFRACTION3.03388
154FAQ|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonX-RAY DIFFRACTION3.11396
164E8V|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+X-RAY DIFFRACTION3.99389
173EOH|1|ARefined group II intron structureX-RAY DIFFRACTION3.12381
183BWP|1|ACrystal structure of a self-spliced group II intronX-RAY DIFFRACTION3.1356
193EOG|1|ACo-crystallization showing exon recognition by a group II intronX-RAY DIFFRACTION3.39388
204DS6|1|ACrystal structure of a group II intron in the pre-catalytic stateX-RAY DIFFRACTION3.64393
215J01|1|AStructure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.X-RAY DIFFRACTION3.39414
224Y1O|1|AOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95258
234Y1N|1|BOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3259
245J02|1|AStructure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.X-RAY DIFFRACTION3.49414
254Y1N|1|AOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3249
264Y1O|1|BOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95256