NR_4.0_35054.4

Members (30)
History
Heat map

#	IFE	Compound(s)	RNA source organism	Title	Method	Resolution	Date
1	3IGI\|1\|A (rep)	Group IIC intron, 5'-R(CPGPCPUPCPUPAPCPUPCPUPAP*U)-3'		Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron	X-RAY DIFFRACTION	3.12	2009-12-22
2	5J02\|1\|A	GROUP II INTRON LARIAT, 5' EXON ANALOG (5'-R(CPUPGPUPUPAP*(5MU))-3')	Oceanobacillus iheyensis	Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.	X-RAY DIFFRACTION	3.49	2016-12-14
3	4FAX\|1\|A	Group IIC intron	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+	X-RAY DIFFRACTION	3.1	2012-11-14
4	4FAR\|1\|A	Group IIC intron	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	2.86	2012-11-14
5	4E8N\|1\|A	Group IIC intron	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+	X-RAY DIFFRACTION	2.96	2012-11-14
6	6T3S\|1\|A	Group IIC Intron Ribozyme	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	3.28	2020-05-13
7	4FAU\|1\|A	Group IIC intron	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	2.87	2012-11-14
8	4FB0\|1\|A	Group IIC intron	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+	X-RAY DIFFRACTION	3.22	2012-11-14
9	4E8K\|1\|A	Group IIC intron, 5'-R(CPGAPUPUPUPAPUPUPA)-3'	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate	X-RAY DIFFRACTION	3.03	2012-11-14
10	4E8Q\|1\|A	Group IIC intron	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+	X-RAY DIFFRACTION	2.84	2012-11-14
11	4Y1O\|1\|A	group II intron, domain 1	Oceanobacillus iheyensis	Oceanobacillus iheyensis group II intron domain 1	X-RAY DIFFRACTION	2.95	2015-10-14
12	4Y1O\|1\|B	group II intron, domain 1	Oceanobacillus iheyensis	Oceanobacillus iheyensis group II intron domain 1	X-RAY DIFFRACTION	2.95	2015-10-14
13	6T3N\|1\|A	Group IIC Intron Ribozyme	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of Na+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	3.22	2020-05-13
14	4E8P\|1\|A	Group IIC intron	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+	X-RAY DIFFRACTION	3.28	2012-11-14
15	4E8T\|1\|A	Group IIC intron, 5'-R(APUPUPUPAPUPUPA)-3'	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)	X-RAY DIFFRACTION	3.34	2012-11-14
16	5J01\|1\|A	group II intron lariat	Oceanobacillus iheyensis	Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.	X-RAY DIFFRACTION	3.39	2016-12-14
17	4FAW\|1\|A	Group IIC intron, 5'-R(AUPUPUPAPUPUPA)-3'	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment	X-RAY DIFFRACTION	2.7	2012-11-14
18	3EOH\|1\|A	Group IIC intron, 5'-R(UPUPAPUPUPA)-3'		Refined group II intron structure	X-RAY DIFFRACTION	3.12	2008-10-28
19	6T3R\|1\|A	Group IIC Intron Ribozyme	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of K+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	3.57	2020-05-13
20	4FAQ\|1\|A	Group IIC intron	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon	X-RAY DIFFRACTION	3.11	2012-11-14
21	4E8R\|1\|A	Group IIC intron	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+	X-RAY DIFFRACTION	3.36	2012-11-14
22	4Y1N\|1\|B	group II intron, domain 1	Oceanobacillus iheyensis	Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-RAY DIFFRACTION	3	2015-10-14
23	3G78\|1\|A	Group II intron, Ligated EXON product	Oceanobacillus iheyensis	Insight into group II intron catalysis from revised crystal structure	X-RAY DIFFRACTION	2.8	2010-02-16
24	4E8M\|1\|A	Group IIC intron	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+	X-RAY DIFFRACTION	3.5	2012-11-14
25	6T3K\|1\|A	Group IIC Intron Ribozyme	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of K+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	3.44	2020-05-13
26	4Y1N\|1\|A	group II intron, domain 1	Oceanobacillus iheyensis	Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-RAY DIFFRACTION	3	2015-10-14
27	4DS6\|1\|A	Mutant Group IIC Intron	Oceanobacillus iheyensis	Crystal structure of a group II intron in the pre-catalytic state	X-RAY DIFFRACTION	3.64	2012-04-18
28	3EOG\|1\|A	Group IIC intron, 5'-R(UPUPAPUPUPA)-3'		Co-crystallization showing exon recognition by a group II intron	X-RAY DIFFRACTION	3.39	2008-10-28
29	3BWP\|1\|A	Group IIC intron		Crystal structure of a self-spliced group II intron	X-RAY DIFFRACTION	3.1	2008-04-15
30	4E8V\|1\|A	Group IIC intron	Oceanobacillus iheyensis	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+	X-RAY DIFFRACTION	3.99	2012-11-14

Release history

Release	3.127
Date	2020-05-20

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_35054.4	NR_4.0_35054.3	3.127	(26) 4FAR\|1\|A, 4Y1O\|1\|B, 4E8M\|1\|A, 4Y1O\|1\|A, 4E8K\|1\|A, 4FAQ\|1\|A, 4Y1N\|1\|B, 4DS6\|1\|A, 4E8V\|1\|A, 4Y1N\|1\|A, 3IGI\|1\|A, 4E8T\|1\|A, 4FB0\|1\|A, 3G78\|1\|A, 4E8R\|1\|A, 4FAX\|1\|A, 3EOH\|1\|A, 4E8Q\|1\|A, 4FAW\|1\|A, 3EOG\|1\|A, 5J02\|1\|A, 4E8P\|1\|A, 4FAU\|1\|A, 3BWP\|1\|A, 5J01\|1\|A, 4E8N\|1\|A	(4) 6T3K\|1\|A, 6T3S\|1\|A, 6T3R\|1\|A, 6T3N\|1\|A	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5J01\|1\|A	Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.	X-RAY DIFFRACTION	3.39	414
2	5J02\|1\|A	Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.	X-RAY DIFFRACTION	3.49	414
3	3EOG\|1\|A	Co-crystallization showing exon recognition by a group II intron	X-RAY DIFFRACTION	3.39	388
4	3BWP\|1\|A	Crystal structure of a self-spliced group II intron	X-RAY DIFFRACTION	3.1	356
5	3EOH\|1\|A	Refined group II intron structure	X-RAY DIFFRACTION	3.12	381
6	4DS6\|1\|A	Crystal structure of a group II intron in the pre-catalytic state	X-RAY DIFFRACTION	3.64	393
7	6T3S\|1\|A	Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	3.28	393
8	6T3N\|1\|A	Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of Na+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	3.22	394
9	4FAX\|1\|A	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+	X-RAY DIFFRACTION	3.1	392
10	4E8R\|1\|A	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+	X-RAY DIFFRACTION	3.36	393
11	4E8P\|1\|A	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+	X-RAY DIFFRACTION	3.28	393
12	4E8Q\|1\|A	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+	X-RAY DIFFRACTION	2.84	393
13	4E8N\|1\|A	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+	X-RAY DIFFRACTION	2.96	393
14	4FB0\|1\|A	Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+	X-RAY DIFFRACTION	3.22	393
15	4E8M\|1\|A	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+	X-RAY DIFFRACTION	3.5	394
16	4FAW\|1\|A	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment	X-RAY DIFFRACTION	2.7	390
17	4FAU\|1\|A	Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	2.87	395
18	4FAR\|1\|A	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	2.86	390
19	6T3K\|1\|A	Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of K+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	3.44	390
20	6T3R\|1\|A	Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of K+, Mg2+ and 5'-exon	X-RAY DIFFRACTION	3.57	389
21	3G78\|1\|A	Insight into group II intron catalysis from revised crystal structure	X-RAY DIFFRACTION	2.8	389
22	3IGI\|1\|A	Tertiary Architecture of the Oceanobacillus Iheyensis Group II Intron	X-RAY DIFFRACTION	3.12	389
23	4E8T\|1\|A	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)	X-RAY DIFFRACTION	3.34	388
24	4E8K\|1\|A	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate	X-RAY DIFFRACTION	3.03	388
25	4FAQ\|1\|A	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon	X-RAY DIFFRACTION	3.11	396
26	4E8V\|1\|A	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+	X-RAY DIFFRACTION	3.99	389
27	4Y1O\|1\|B	Oceanobacillus iheyensis group II intron domain 1	X-RAY DIFFRACTION	2.95	256
28	4Y1N\|1\|A	Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-RAY DIFFRACTION	3	249
29	4Y1N\|1\|B	Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine	X-RAY DIFFRACTION	3	259
30	4Y1O\|1\|A	Oceanobacillus iheyensis group II intron domain 1	X-RAY DIFFRACTION	2.95	258

Equivalence class NR_4.0_35054.4 Current

Release history

Parents

Children