Equivalence class NR_4.0_35133.5 Current
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 2Z75|1|B (rep) | glmS ribozyme RNA | Caldanaerobacter subterraneus | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 1.7 | 2007-09-04 |
| 2 | 2GCV|1|B | glmS ribozyme product oligonucleotide, glmS ribozyme RNA | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 2006-09-26 | |
| 3 | 2Z74|1|B | glmS ribozyme RNA | T. tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.2 | 2007-09-04 | |
| 4 | 2H0X|1|B | glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.3 | 2006-09-26 | |
| 5 | 2H0W|1|B | glmS ribozyme product oligonucleotide, glmS ribozyme RNA | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.4 | 2006-09-26 | |
| 6 | 2GCS|1|B | glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 2006-09-26 | |
| 7 | 3B4B|1|B | glmS ribozyme substrate with 2'5'-phosphodiester linkage, glmS ribozyme RNA | Caldanaerobacter subterraneus | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 2.7 | 2007-12-11 |
| 8 | 2HO6|1|B | glmS ribozyme substrate RNA, glmS ribozyme RNA | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.8 | 2006-09-26 | |
| 9 | 2HO7|1|B | glmS ribozyme substrate RNA, glmS ribozyme RNA | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.9 | 2006-09-26 | |
| 10 | 3B4A|1|B | glmS ribozyme substrate RNA, glmS ribozyme RNA | Caldanaerobacter subterraneus | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 2.7 | 2007-12-11 |
| 11 | 4MEG|1|B | glmS triple mutant ribozyme, (121-MER) ribozyme | In vitro evolved glmS ribozyme triple mutant, magnesium ion complex | X-RAY DIFFRACTION | 3.1 | 2013-10-16 | |
| 12 | 3B4C|1|B | glmS ribozyme substrate with a 2'5'-phosphodiester linkage, glmS ribozyme RNA | Caldanaerobacter subterraneus | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 3 | 2007-12-11 |
| 13 | 4MEH|1|B | glmS triple mutant ribozyme, (122-MER) ribozyme | In vitro evolved glmS ribozyme triple mutant, calcium ion complex | X-RAY DIFFRACTION | 3.12 | 2013-10-16 | |
| 14 | 2H0S|1|B | glmS ribozyme RNA | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.35 | 2006-09-26 |
Release history
| Release | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4MEG|1|B | In vitro evolved glmS ribozyme triple mutant, magnesium ion complex | X-RAY DIFFRACTION | 3.1 | 121 |
| 2 | 2H0S|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.35 | 122 |
| 3 | 2GCV|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 122 |
| 4 | 2H0W|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.4 | 122 |
| 5 | 2HO6|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.8 | 122 |
| 6 | 2HO7|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.9 | 122 |
| 7 | 3B4B|1|B | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 2.7 | 123 |
| 8 | 2GCS|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 122 |
| 9 | 2H0X|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.3 | 122 |
| 10 | 2Z75|1|B | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 1.7 | 123 |
| 11 | 2Z74|1|B | T. tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.2 | 123 |
| 12 | 3B4A|1|B | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 2.7 | 121 |
| 13 | 3B4C|1|B | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 3 | 121 |
| 14 | 4MEH|1|B | In vitro evolved glmS ribozyme triple mutant, calcium ion complex | X-RAY DIFFRACTION | 3.12 | 122 |