Equivalence class NR_4.0_36683.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8A98|1|1+ 8A98|1|7 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | LSUa_rRNA_chain_1, 5.8S_rRNA_chain_7 | Leishmania major strain Friedlin | Eukarya | RF02543 + RF00002 | CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : snoRNA MUTANT | Electron microscopy | 2.46 | 2023-10-11 |
| 2 | 6AZ3|1|1+ 6AZ3|1|7 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | rRNA alpha, rRNA 5.8S | Leishmania donovani | Eukarya | RF02543 + RF00002 | Cryo-EM structure of of the large subunit of Leishmania ribosome bound to paromomycin | Electron microscopy | 2.5 | 2017-12-06 |
| 3 | 5T2A|1|A+ 5T2A|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | LSU-alpha, 5.8S rRNA | Leishmania donovani | Eukarya | RF02543 + RF00002 | CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution | Electron microscopy | 2.9 | 2017-01-25 |
| 4 | 3JCS|1|1+ 3JCS|1|7 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 26S alpha ribosomal RNA, 5.8S ribosomal RNA | Leishmania donovani | Eukarya | RF02543 + RF00002 | 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania | Electron microscopy | 2.8 | 2016-07-20 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_36683.3 | NR_4.0_36683.2 | 3.304 | (3) 3JCS|1|1+3JCS|1|7, 6AZ3|1|1+6AZ3|1|7, 5T2A|1|A+5T2A|1|C | (1) 8A98|1|1+8A98|1|7 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8A98|1|1+8A98|1|7 | CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : snoRNA MUTANT | ELECTRON MICROSCOPY | 2.46 | 1544 |
| 2 | 6AZ3|1|1+6AZ3|1|7 | Cryo-EM structure of of the large subunit of Leishmania ribosome bound to paromomycin | ELECTRON MICROSCOPY | 2.5 | 1595 |
| 3 | 5T2A|1|A+5T2A|1|C | CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution | ELECTRON MICROSCOPY | 2.9 | 1603 |
| 4 | 3JCS|1|1+3JCS|1|7 | 2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania | ELECTRON MICROSCOPY | 2.8 | 1538 |