Equivalence class NR_4.0_37229.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1MFQ|1|A (rep) | Signal recognition particle RNA | 7S RNA of human SRP | Homo sapiens | Eukarya | RF00017 | Crystal Structure Analysis of a Ternary S-Domain Complex of Human Signal Recognition Particle | X-ray diffraction | 3.1 | 2002-09-20 |
| 2 | 5M73|1|A | Signal recognition particle RNA | Human gene for small cytoplasmic 7SL RNA (7L30.1) | Homo sapiens | Eukarya | RF00017 | Structure of the human SRP S domain with SRP72 RNA-binding domain | X-ray diffraction | 3.4 | 2016-12-07 |
| 3 | 5M73|1|E | Signal recognition particle RNA | Human gene for small cytoplasmic 7SL RNA (7L30.1) | Homo sapiens | Eukarya | RF00017 | Structure of the human SRP S domain with SRP72 RNA-binding domain | X-ray diffraction | 3.4 | 2016-12-07 |
| 4 | 4P3E|1|A | Signal recognition particle RNA | SRP RNA (124-mer) | Homo sapiens | Eukarya | RF00017 | Structure of the human SRP S domain | X-ray diffraction | 3.5 | 2014-04-16 |
| 5 | 3KTV|1|C | Signal recognition particle RNA | SRP RNA | Homo sapiens | Eukarya | RF00017 | Crystal structure of the human SRP19/S-domain SRP RNA complex | X-ray diffraction | 3.8 | 2010-02-16 |
| 6 | 3KTV|1|A | Signal recognition particle RNA | SRP RNA | Homo sapiens | Eukarya | RF00017 | Crystal structure of the human SRP19/S-domain SRP RNA complex | X-ray diffraction | 3.8 | 2010-02-16 |
| 7 | 7OBR|1|1 | Signal recognition particle RNA | SRP RNA | Canis lupus familiaris | Eukarya | RF00017 | RNC-SRP early complex | Electron microscopy | 2.8 | 2021-07-21 |
| 8 | 7NFX|1|1 | Signal recognition particle RNA | SRP RNA 7SL | Homo sapiens | Eukarya | RF00017 | Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A | Electron microscopy | 3.2 | 2021-06-02 |
| 9 | 7OBQ|1|1 | Signal recognition particle RNA | SRP RNA | Canis lupus familiaris | Eukarya | RF00017 | SRP-SR at the distal site conformation | Electron microscopy | 3.9 | 2021-07-21 |
Release history
| Release | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_37229.1 | NR_4.0_54173.1 | 3.188 | (2) 5M73|1|E, 5M73|1|A | (7) 7OBR|1|1, 7OBQ|1|1, 7NFX|1|1, 4P3E|1|A, 3KTV|1|C, 3KTV|1|A, 1MFQ|1|A | (0) |
| NR_4.0_37229.1 | NR_4.0_60015.1 | 3.188 | (1) 7NFX|1|1 | (8) 1MFQ|1|A, 7OBR|1|1, 7OBQ|1|1, 5M73|1|E, 5M73|1|A, 4P3E|1|A, 3KTV|1|C, 3KTV|1|A | (0) |
| NR_4.0_37229.1 | NR_4.0_64349.1 | 3.188 | (4) 4P3E|1|A, 3KTV|1|C, 3KTV|1|A, 1MFQ|1|A | (5) 7OBR|1|1, 7OBQ|1|1, 7NFX|1|1, 5M73|1|E, 5M73|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1MFQ|1|A | Crystal Structure Analysis of a Ternary S-Domain Complex of Human Signal Recognition Particle | X-RAY DIFFRACTION | 3.1 | 127 |
| 2 | 3KTV|1|A | Crystal structure of the human SRP19/S-domain SRP RNA complex | X-RAY DIFFRACTION | 3.8 | 108 |
| 3 | 3KTV|1|C | Crystal structure of the human SRP19/S-domain SRP RNA complex | X-RAY DIFFRACTION | 3.8 | 107 |
| 4 | 4P3E|1|A | Structure of the human SRP S domain | X-RAY DIFFRACTION | 3.5 | 130 |
| 5 | 7OBR|1|1 | RNC-SRP early complex | ELECTRON MICROSCOPY | 2.8 | 249 |
| 6 | 7NFX|1|1 | Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A | ELECTRON MICROSCOPY | 3.2 | 249 |
| 7 | 7OBQ|1|1 | SRP-SR at the distal site conformation | ELECTRON MICROSCOPY | 3.9 | 165 |
| 8 | 5M73|1|A | Structure of the human SRP S domain with SRP72 RNA-binding domain | X-RAY DIFFRACTION | 3.4 | 144 |
| 9 | 5M73|1|E | Structure of the human SRP S domain with SRP72 RNA-binding domain | X-RAY DIFFRACTION | 3.4 | 144 |