BGSU RNA Site //

Equivalence class NR_4.0_37403.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
18EOS|1|R (rep)RNA (5'-R(P*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructSyntheticM. tuberculosis RNAP elongation complex with NusG and CMPCPPElectron microscopy3.12023-02-01
28EOT|1|RRNA (5'-R(P*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructSyntheticM. tuberculosis RNAP elongation complex with NusGElectron microscopy3.32023-02-01
36J9E|1|IRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructSyntheticCryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7Electron microscopy3.412019-07-17
46M6C|1|RRNAThermus thermophilusBacteriaCryoEM structure of Thermus thermophilus RNA polymerase elongation complexElectron microscopy3.12020-10-14
56X50|1|RRNA (20-mer)Escherichia coliBacteriaMfd-bound E.coli RNA polymerase elongation complex - V stateElectron microscopy3.32021-02-03
66C6T|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliBacteriaCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHElectron microscopy3.52018-07-25
76J9F|1|IRNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3')synthetic constructSyntheticCryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7Electron microscopy3.952019-07-17
86X4Y|1|RRNA (20-mer)Escherichia coliBacteriaMfd-bound E.coli RNA polymerase elongation complex - IV stateElectron microscopy3.62021-02-03
96X43|1|RRNA (20-mer)Escherichia coliBacteriaMfd-bound E.coli RNA polymerase elongation complex - II stateElectron microscopy3.62021-02-03
106C6U|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliBacteriaCryoEM structure of E.coli RNA polymerase elongation complex bound with NusGElectron microscopy3.72018-07-25
116C6S|1|RRNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3')Escherichia coliBacteriaCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHElectron microscopy3.72018-07-25
126X4W|1|RRNA (20-mer)Escherichia coliBacteriaMfd-bound E.coli RNA polymerase elongation complex - III stateElectron microscopy3.82021-02-03
136X2N|1|RRNA (20-MER)Escherichia coliBacteriaMfd-bound E.coli RNA polymerase elongation complex - I stateElectron microscopy3.92021-02-03
146X2F|1|RRNA (20-MER)Escherichia coliBacteriaMfd-bound E.coli RNA polymerase elongation complex - L2 stateElectron microscopy42021-02-03

Release history

Release3.2683.2693.2703.2713.2723.2733.274
Date2023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-15

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_37403.2NR_4.0_06923.13.268(1) 6M6C|1|R(13) 8EOT|1|R, 8EOS|1|R, 6X50|1|R, 6X4Y|1|R, 6X4W|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6J9F|1|I, 6J9E|1|I, 6C6U|1|R, 6C6T|1|R, 6C6S|1|R(0)
NR_4.0_37403.2NR_4.0_37403.13.268(11) 6X50|1|R, 6X4Y|1|R, 6X4W|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6J9F|1|I, 6J9E|1|I, 6C6U|1|R, 6C6T|1|R, 6C6S|1|R(3) 8EOS|1|R, 6M6C|1|R, 8EOT|1|R(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_37403.2NR_4.0_37403.33.275(14) 6J9E|1|I, 6X50|1|R, 6C6U|1|R, 6X4Y|1|R, 6C6T|1|R, 6X4W|1|R, 6C6S|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6M6C|1|R, 8EOT|1|R, 6J9F|1|I, 8EOS|1|R(0) (2) 8E95|1|R, 8E82|1|R

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16X43|1|RMfd-bound E.coli RNA polymerase elongation complex - II stateELECTRON MICROSCOPY3.610
26C6S|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHELECTRON MICROSCOPY3.710
36C6T|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with RfaHELECTRON MICROSCOPY3.510
46C6U|1|RCryoEM structure of E.coli RNA polymerase elongation complex bound with NusGELECTRON MICROSCOPY3.710
56X50|1|RMfd-bound E.coli RNA polymerase elongation complex - V stateELECTRON MICROSCOPY3.39
66X2N|1|RMfd-bound E.coli RNA polymerase elongation complex - I stateELECTRON MICROSCOPY3.99
76M6C|1|RCryoEM structure of Thermus thermophilus RNA polymerase elongation complexELECTRON MICROSCOPY3.110
86X2F|1|RMfd-bound E.coli RNA polymerase elongation complex - L2 stateELECTRON MICROSCOPY49
96J9F|1|ICryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7ELECTRON MICROSCOPY3.9512
106J9E|1|ICryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7ELECTRON MICROSCOPY3.4112
116X4W|1|RMfd-bound E.coli RNA polymerase elongation complex - III stateELECTRON MICROSCOPY3.89
126X4Y|1|RMfd-bound E.coli RNA polymerase elongation complex - IV stateELECTRON MICROSCOPY3.610
138EOS|1|RM. tuberculosis RNAP elongation complex with NusG and CMPCPPELECTRON MICROSCOPY3.113
148EOT|1|RM. tuberculosis RNAP elongation complex with NusGELECTRON MICROSCOPY3.313
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