Equivalence class NR_4.0_40313.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7ZHG|1|2 (rep) | Small subunit ribosomal RNA | rRNA 16S, mRNA | Pyrococcus abyssi GE5 | Archaea | RF01959 | High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop | Electron microscopy | 2.25 | 2022-06-29 |
| 2 | 6TH6|1|Aa | Small subunit ribosomal RNA | 16S ribosomal RNA | Thermococcus kodakarensis | Archaea | RF01959 | Cryo-EM Structure of T. kodakarensis 70S ribosome | Electron microscopy | 2.55 | 2020-07-29 |
| 3 | 6SKG|1|Aa | Small subunit ribosomal RNA | 16S ribosomal RNA | Thermococcus kodakarensis | Archaea | RF01959 | Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain | Electron microscopy | 2.65 | 2020-07-29 |
| 4 | 6TMF|1|A | Small subunit ribosomal RNA | 16S ribosomal RNA | Thermococcus celer | Archaea | RF01959 | Structure of an archaeal ABCE1-bound ribosomal post-splitting complex | Electron microscopy | 2.8 | 2020-02-12 |
| 5 | 6SKF|1|Aa | Small subunit ribosomal RNA | 16S rRNA | Thermococcus kodakarensis | Archaea | RF01959 | Cryo-EM Structure of T. kodakarensis 70S ribosome | Electron microscopy | 2.95 | 2020-07-29 |
| 6 | 6SWC|1|2 | Small subunit ribosomal RNA | 16S ribosomal rRNA, mRNA | Pyrococcus abyssi | Archaea | RF01959 | IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi | Electron microscopy | 3.3 | 2020-02-19 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6TMF|1|A | Structure of an archaeal ABCE1-bound ribosomal post-splitting complex | ELECTRON MICROSCOPY | 2.8 | 1485 |
| 2 | 6SKG|1|Aa | Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain | ELECTRON MICROSCOPY | 2.65 | 1399 |
| 3 | 6TH6|1|Aa | Cryo-EM Structure of T. kodakarensis 70S ribosome | ELECTRON MICROSCOPY | 2.55 | 1439 |
| 4 | 6SKF|1|Aa | Cryo-EM Structure of T. kodakarensis 70S ribosome | ELECTRON MICROSCOPY | 2.95 | 1385 |
| 5 | 6SWC|1|2 | IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi | ELECTRON MICROSCOPY | 3.3 | 1454 |
| 6 | 7ZHG|1|2 | High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop | ELECTRON MICROSCOPY | 2.25 | 1429 |