BGSU RNA Site

Equivalence class NR_4.0_41610.10 Current

#IFECompound(s)RNA source organismTitleMethodResolutionDate
16TPQ|1|U (rep)pre-23S rRNABacillus subtilisRNase M5 bound to 50S ribosome with precursor 5S rRNAELECTRON MICROSCOPY3.072020-09-30
27AQD|1|A23S ribosomal RNAStructure of the bacterial RQC complex (Translocating State)ELECTRON MICROSCOPY3.12020-11-25
37AQC|1|A23S ribosomal RNAStructure of the bacterial RQC complex (Decoding State)ELECTRON MICROSCOPY2.992020-11-25
46TNN|1|Upre-23S rRNABacillus subtilisMini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAELECTRON MICROSCOPY3.072020-09-30
57AS8|1|A23S rRNABacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY2.92020-12-09
66HA1|1|A23S ribosomal RNABacillus subtilisCryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.12018-08-29
77AS9|1|A23S rRNABacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.ELECTRON MICROSCOPY3.52020-12-23
86HA8|1|A23S rRNABacillus subtilisCryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.52018-08-29
95NJT|1|U23S ribosomal RNABacillus subtilisStructure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.ELECTRON MICROSCOPY3.82017-06-14
103J9W|1|BA23S ribosomal RNABacillus subtilisCryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexELECTRON MICROSCOPY3.92015-04-29
116PPF|1|A23S rRNABacillus subtilisBacterial 45SRbgA ribosomal particle class BELECTRON MICROSCOPY3.42019-09-18
126PVK|1|A23S rRNABacillus subtilisBacterial 45SRbgA ribosomal particle class AELECTRON MICROSCOPY3.42019-09-18
137ASA|1|A23S rRNABacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY3.52020-12-23

Release history

Release3.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.187
Date2020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-14

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_41610.10NR_4.0_41610.93.158(11) 6PPF|1|A, 6HA8|1|A, 6HA1|1|A, 5NJT|1|U, 3J9W|1|BA, 7AS8|1|A, 7AQD|1|A, 7AQC|1|A, 6TPQ|1|U, 6TNN|1|U, 6PVK|1|A(2) 7AS9|1|A, 7ASA|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16PVK|1|ABacterial 45SRbgA ribosomal particle class AELECTRON MICROSCOPY3.42169
26PPF|1|ABacterial 45SRbgA ribosomal particle class BELECTRON MICROSCOPY3.42471
36TPQ|1|URNase M5 bound to 50S ribosome with precursor 5S rRNAELECTRON MICROSCOPY3.072924
46TNN|1|UMini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAELECTRON MICROSCOPY3.072930
57AQC|1|AStructure of the bacterial RQC complex (Decoding State)ELECTRON MICROSCOPY2.992820
67AQD|1|AStructure of the bacterial RQC complex (Translocating State)ELECTRON MICROSCOPY3.12918
73J9W|1|BACryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexELECTRON MICROSCOPY3.92923
85NJT|1|UStructure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.ELECTRON MICROSCOPY3.82923
96HA8|1|ACryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.52887
107AS9|1|ABacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.ELECTRON MICROSCOPY3.52812
116HA1|1|ACryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.12887
127AS8|1|ABacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY2.92812
137ASA|1|ABacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY3.582