Equivalence class NR_4.0_41610.10 Current
# | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
---|---|---|---|---|---|---|---|
1 | 6TPQ|1|U (rep) | pre-23S rRNA | Bacillus subtilis | RNase M5 bound to 50S ribosome with precursor 5S rRNA | ELECTRON MICROSCOPY | 3.07 | 2020-09-30 |
2 | 7AQD|1|A | 23S ribosomal RNA | Structure of the bacterial RQC complex (Translocating State) | ELECTRON MICROSCOPY | 3.1 | 2020-11-25 | |
3 | 7AQC|1|A | 23S ribosomal RNA | Structure of the bacterial RQC complex (Decoding State) | ELECTRON MICROSCOPY | 2.99 | 2020-11-25 | |
4 | 6TNN|1|U | pre-23S rRNA | Bacillus subtilis | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | ELECTRON MICROSCOPY | 3.07 | 2020-09-30 |
5 | 7AS8|1|A | 23S rRNA | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 2.9 | 2020-12-09 | |
6 | 6HA1|1|A | 23S ribosomal RNA | Bacillus subtilis | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 2018-08-29 |
7 | 7AS9|1|A | 23S rRNA | Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH. | ELECTRON MICROSCOPY | 3.5 | 2020-12-23 | |
8 | 6HA8|1|A | 23S rRNA | Bacillus subtilis | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | ELECTRON MICROSCOPY | 3.5 | 2018-08-29 |
9 | 5NJT|1|U | 23S ribosomal RNA | Bacillus subtilis | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | ELECTRON MICROSCOPY | 3.8 | 2017-06-14 |
10 | 3J9W|1|BA | 23S ribosomal RNA | Bacillus subtilis | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | ELECTRON MICROSCOPY | 3.9 | 2015-04-29 |
11 | 6PPF|1|A | 23S rRNA | Bacillus subtilis | Bacterial 45SRbgA ribosomal particle class B | ELECTRON MICROSCOPY | 3.4 | 2019-09-18 |
12 | 6PVK|1|A | 23S rRNA | Bacillus subtilis | Bacterial 45SRbgA ribosomal particle class A | ELECTRON MICROSCOPY | 3.4 | 2019-09-18 |
13 | 7ASA|1|A | 23S rRNA | Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 3.5 | 2020-12-23 |
Parents
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 6PVK|1|A | Bacterial 45SRbgA ribosomal particle class A | ELECTRON MICROSCOPY | 3.4 | 2169 |
2 | 6PPF|1|A | Bacterial 45SRbgA ribosomal particle class B | ELECTRON MICROSCOPY | 3.4 | 2471 |
3 | 6TPQ|1|U | RNase M5 bound to 50S ribosome with precursor 5S rRNA | ELECTRON MICROSCOPY | 3.07 | 2924 |
4 | 6TNN|1|U | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | ELECTRON MICROSCOPY | 3.07 | 2930 |
5 | 7AQC|1|A | Structure of the bacterial RQC complex (Decoding State) | ELECTRON MICROSCOPY | 2.99 | 2820 |
6 | 7AQD|1|A | Structure of the bacterial RQC complex (Translocating State) | ELECTRON MICROSCOPY | 3.1 | 2918 |
7 | 3J9W|1|BA | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | ELECTRON MICROSCOPY | 3.9 | 2923 |
8 | 5NJT|1|U | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | ELECTRON MICROSCOPY | 3.8 | 2923 |
9 | 6HA8|1|A | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | ELECTRON MICROSCOPY | 3.5 | 2887 |
10 | 7AS9|1|A | Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH. | ELECTRON MICROSCOPY | 3.5 | 2812 |
11 | 6HA1|1|A | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 2887 |
12 | 7AS8|1|A | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 2.9 | 2812 |
13 | 7ASA|1|A | Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 3.5 | 82 |