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Equivalence class NR_4.0_41610.12 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16TPQ|1|U (rep)Large subunit ribosomal RNApre-23S rRNABacillus subtilisBacteriaRF02541RNase M5 bound to 50S ribosome with precursor 5S rRNAElectron microscopy3.072020-09-30
27AQD|1|ALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Structure of the bacterial RQC complex (Translocating State)Electron microscopy3.12020-11-25
37AQC|1|ALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Structure of the bacterial RQC complex (Decoding State)Electron microscopy2.992020-11-25
46TNN|1|ULarge subunit ribosomal RNApre-23S rRNABacillus subtilisBacteriaRF02541Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAElectron microscopy3.072020-09-30
57AS8|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOElectron microscopy2.92020-12-09
66HA1|1|ALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinElectron microscopy3.12018-08-29
77O5B|1|XLarge subunit ribosomal RNA23S rRNA (2887-MER)Bacillus subtilis subsp. subtilis str. 168BacteriaRF02541Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundElectron microscopy3.332022-02-02
87OPE|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)Electron microscopy3.22021-07-21
97AS9|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.Electron microscopy3.52020-12-23
106HA8|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeElectron microscopy3.52018-08-29
115NJT|1|ULarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.Electron microscopy3.82017-06-14
123J9W|1|BALarge subunit ribosomal RNA23S ribosomal RNABacillus subtilisBacteriaRF02541Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexElectron microscopy3.92015-04-29
136PPF|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Bacterial 45SRbgA ribosomal particle class BElectron microscopy3.42019-09-18
146PVK|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilisBacteriaRF02541Bacterial 45SRbgA ribosomal particle class AElectron microscopy3.42019-09-18
157ASA|1|ALarge subunit ribosomal RNA23S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF02541Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOElectron microscopy3.52020-12-23

Release history

Release3.2163.2173.2183.219
Date2022-02-022022-02-092022-02-162022-02-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_41610.12NR_4.0_41610.113.216(14) 3J9W|1|BA, 5NJT|1|U, 6HA1|1|A, 6HA8|1|A, 6PPF|1|A, 6PVK|1|A, 6TNN|1|U, 6TPQ|1|U, 7AQC|1|A, 7AQD|1|A, 7AS8|1|A, 7AS9|1|A, 7ASA|1|A, 7OPE|1|A(1) 7O5B|1|X(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_41610.12NR_4.0_41610.133.220(15) 3J9W|1|BA, 5NJT|1|U, 6HA1|1|A, 6HA8|1|A, 6PPF|1|A, 6PVK|1|A, 6TNN|1|U, 6TPQ|1|U, 7AQC|1|A, 7AQD|1|A, 7AS8|1|A, 7AS9|1|A, 7ASA|1|A, 7O5B|1|X, 7OPE|1|A(0) (2) 7S9U|1|A, 7SAE|1|A

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.

#SPDBTitleMethodResolutionLength
1
6TNN|1|U		Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAELECTRON MICROSCOPY3.072930
2
6TPQ|1|U		RNase M5 bound to 50S ribosome with precursor 5S rRNAELECTRON MICROSCOPY3.072924
3
6PVK|1|A		Bacterial 45SRbgA ribosomal particle class AELECTRON MICROSCOPY3.42169
4
6PPF|1|A		Bacterial 45SRbgA ribosomal particle class BELECTRON MICROSCOPY3.42471
5
7O5B|1|X		Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundELECTRON MICROSCOPY3.332887
6
7AQC|1|A		Structure of the bacterial RQC complex (Decoding State)ELECTRON MICROSCOPY2.992820
7
7AQD|1|A		Structure of the bacterial RQC complex (Translocating State)ELECTRON MICROSCOPY3.12918
8
3J9W|1|BA		Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexELECTRON MICROSCOPY3.92923
9
5NJT|1|U		Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.ELECTRON MICROSCOPY3.82923
10
6HA8|1|A		Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.52887
11
7AS9|1|A		Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.ELECTRON MICROSCOPY3.52812
12
6HA1|1|A		Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.12887
13
7OPE|1|A		RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)ELECTRON MICROSCOPY3.22814
14
7AS8|1|A		Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY2.92812
15
7ASA|1|A		Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY3.582

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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