Equivalence class NR_4.0_41610.20 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8S1P|1|A (rep) | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | YlmH bound to PtRNA-50S | Electron microscopy | 1.96 | 2024-06-12 |
| 2 | 8QCQ|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | B. subtilis ApdA-stalled ribosomal complex | Electron microscopy | 2.3 | 2024-03-20 |
| 3 | 8BUU|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | ARE-ABCF VmlR2 bound to a 70S ribosome | Electron microscopy | 2.9 | 2023-04-05 |
| 4 | 6TPQ|1|U | Large subunit ribosomal RNA | pre-23S rRNA | Bacillus subtilis | Bacteria | RF02541 | RNase M5 bound to 50S ribosome with precursor 5S rRNA | Electron microscopy | 3.07 | 2020-09-30 |
| 5 | 7AQD|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Structure of the bacterial RQC complex (Translocating State) | Electron microscopy | 3.1 | 2020-11-25 |
| 6 | 7AQC|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Structure of the bacterial RQC complex (Decoding State) | Electron microscopy | 2.99 | 2020-11-25 |
| 7 | 6TNN|1|U | Large subunit ribosomal RNA | pre-23S rRNA | Bacillus subtilis | Bacteria | RF02541 | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | Electron microscopy | 3.07 | 2020-09-30 |
| 8 | 7AS8|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | Electron microscopy | 2.9 | 2020-12-09 |
| 9 | 6HA1|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis | Bacteria | RF02541 | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | Electron microscopy | 3.1 | 2018-08-29 |
| 10 | 7O5B|1|X | Large subunit ribosomal RNA | 23S rRNA (2887-MER) | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound | Electron microscopy | 3.33 | 2022-02-02 |
| 11 | 8QPP|1|X | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis | Bacteria | RF02541 | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | Electron microscopy | 3.4 | 2023-12-27 |
| 12 | 7OPE|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement) | Electron microscopy | 3.2 | 2021-07-21 |
| 13 | 7QV1|1|V | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Bacillus subtilis collided disome (Leading 70S) | Electron microscopy | 3.5 | 2022-03-09 |
| 14 | 7QV2|1|V | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Bacillus subtilis collided disome (Collided 70S) | Electron microscopy | 3.5 | 2022-03-09 |
| 15 | 8S1U|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | YlmH bound to stalled 50S subunits with RqcH and PtRNA | Electron microscopy | 3.4 | 2024-06-12 |
| 16 | 8R55|1|X | Large subunit ribosomal RNA | 23S RNA (2887-MER) | Bacillus subtilis | Bacteria | RF02541 | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | Electron microscopy | 3.57 | 2024-01-17 |
| 17 | 7AS9|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH. | Electron microscopy | 3.5 | 2020-12-23 |
| 18 | 6HA8|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis | Bacteria | RF02541 | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | Electron microscopy | 3.5 | 2018-08-29 |
| 19 | 7SAE|1|A | Large subunit ribosomal RNA | RNA (2434-MER) | Bacillus subtilis | Bacteria | RF02541 | 44SR70P Class1 ribosomal particle | Electron microscopy | 3 | 2022-03-02 |
| 20 | 5NJT|1|U | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis | Bacteria | RF02541 | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | Electron microscopy | 3.8 | 2017-06-14 |
| 21 | 3J9W|1|BA | Large subunit ribosomal RNA | 23S ribosomal RNA | Bacillus subtilis | Bacteria | RF02541 | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | Electron microscopy | 3.9 | 2015-04-29 |
| 22 | 7S9U|1|A | Large subunit ribosomal RNA | RNA (2436-MER) | Bacillus subtilis | Bacteria | RF02541 | 44SR3C ribosomal particle | Electron microscopy | 3.2 | 2022-03-02 |
| 23 | 6PPF|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis | Bacteria | RF02541 | Bacterial 45SRbgA ribosomal particle class B | Electron microscopy | 3.4 | 2019-09-18 |
| 24 | 6PVK|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis | Bacteria | RF02541 | Bacterial 45SRbgA ribosomal particle class A | Electron microscopy | 3.4 | 2019-09-18 |
| 25 | 7ASA|1|A | Large subunit ribosomal RNA | 23S rRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF02541 | Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | Electron microscopy | 3.5 | 2020-12-23 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7QV2|1|V | Bacillus subtilis collided disome (Collided 70S) | ELECTRON MICROSCOPY | 3.5 | 2887 |
| 2 | 6PVK|1|A | Bacterial 45SRbgA ribosomal particle class A | ELECTRON MICROSCOPY | 3.4 | 2169 |
| 3 | 6PPF|1|A | Bacterial 45SRbgA ribosomal particle class B | ELECTRON MICROSCOPY | 3.4 | 2471 |
| 4 | 7S9U|1|A | 44SR3C ribosomal particle | ELECTRON MICROSCOPY | 3.2 | 2436 |
| 5 | 7SAE|1|A | 44SR70P Class1 ribosomal particle | ELECTRON MICROSCOPY | 3 | 2434 |
| 6 | 6TPQ|1|U | RNase M5 bound to 50S ribosome with precursor 5S rRNA | ELECTRON MICROSCOPY | 3.07 | 2924 |
| 7 | 6TNN|1|U | Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA | ELECTRON MICROSCOPY | 3.07 | 2930 |
| 8 | 7QV1|1|V | Bacillus subtilis collided disome (Leading 70S) | ELECTRON MICROSCOPY | 3.5 | 2887 |
| 9 | 7AQC|1|A | Structure of the bacterial RQC complex (Decoding State) | ELECTRON MICROSCOPY | 2.99 | 2820 |
| 10 | 7AQD|1|A | Structure of the bacterial RQC complex (Translocating State) | ELECTRON MICROSCOPY | 3.1 | 2918 |
| 11 | 3J9W|1|BA | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | ELECTRON MICROSCOPY | 3.9 | 2923 |
| 12 | 5NJT|1|U | Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. | ELECTRON MICROSCOPY | 3.8 | 2923 |
| 13 | 8R55|1|X | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | ELECTRON MICROSCOPY | 3.57 | 2887 |
| 14 | 8QPP|1|X | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | ELECTRON MICROSCOPY | 3.4 | 2887 |
| 15 | 7O5B|1|X | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound | ELECTRON MICROSCOPY | 3.33 | 2887 |
| 16 | 7AS9|1|A | Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH. | ELECTRON MICROSCOPY | 3.5 | 2812 |
| 17 | 8S1P|1|A | YlmH bound to PtRNA-50S | ELECTRON MICROSCOPY | 1.96 | 2721 |
| 18 | 8S1U|1|A | YlmH bound to stalled 50S subunits with RqcH and PtRNA | ELECTRON MICROSCOPY | 3.4 | 2777 |
| 19 | 8BUU|1|A | ARE-ABCF VmlR2 bound to a 70S ribosome | ELECTRON MICROSCOPY | 2.9 | 2850 |
| 20 | 6HA8|1|A | Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome | ELECTRON MICROSCOPY | 3.5 | 2887 |
| 21 | 8QCQ|1|A | B. subtilis ApdA-stalled ribosomal complex | ELECTRON MICROSCOPY | 2.3 | 2742 |
| 22 | 6HA1|1|A | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 2887 |
| 23 | 7OPE|1|A | RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement) | ELECTRON MICROSCOPY | 3.2 | 2814 |
| 24 | 7AS8|1|A | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 2.9 | 2812 |
| 25 | 7ASA|1|A | Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 3.5 | 82 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: