Equivalence class NR_4.0_41668.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4LJ0|1|C (rep) | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 2013-10-09 | ||||
| 2 | 4LJ0|1|D | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 2013-10-09 | ||||
| 3 | 4LJ0|1|E | polyadenosine RNA | Nab2 Zn fingers complexed with polyadenosine | X-ray diffraction | 2.15 | 2013-10-09 | ||||
| 4 | 7M50|1|TT+ 7M50|1|kk | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-ray diffraction | 2.31 | 2021-12-15 | |||
| 5 | 5BKN|1|P | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 2021-12-15 | |||
| 6 | 5BKN|1|S+ 5BKN|1|h | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 2021-12-15 | |||
| 7 | 5BKN|1|a | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Satellite tobacco mosaic virus | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-ray diffraction | 3 | 2021-12-15 | |||
| 8 | 8CX0|1|K | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | Spodoptera frugiperda | Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complex | Electron microscopy | 2.7 | 2023-02-15 | |||
| 9 | 7OGK|1|D | 3'ETS(LeuZ) | Escherichia coli | A cooperative PNPase-Hfq-RNA carrier complex facilitates bacterial riboregulation. PNPase-3'ETS(leuZ) | Electron microscopy | 3.4 | 2021-07-07 | |||
| 10 | 5LZY|1|hh | mRNA (polyadenylated) | Oryctolagus cuniculus | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | Electron microscopy | 3.99 | 2016-11-30 |
Release history
| Release | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_41668.2 | NR_4.0_41668.1 | 3.270 | (9) 7OGK|1|D, 7M50|1|TT+7M50|1|kk, 5LZY|1|hh, 5BKN|1|a, 5BKN|1|S+5BKN|1|h, 5BKN|1|P, 4LJ0|1|E, 4LJ0|1|D, 4LJ0|1|C | (1) 8CX0|1|K | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5BKN|1|a | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 4 |
| 2 | 4LJ0|1|E | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 2 |
| 3 | 4LJ0|1|C | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 4 |
| 4 | 4LJ0|1|D | Nab2 Zn fingers complexed with polyadenosine | X-RAY DIFFRACTION | 2.15 | 4 |
| 5 | 5LZY|1|hh | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | ELECTRON MICROSCOPY | 3.99 | 8 |
| 6 | 7OGK|1|D | A cooperative PNPase-Hfq-RNA carrier complex facilitates bacterial riboregulation. PNPase-3'ETS(leuZ) | ELECTRON MICROSCOPY | 3.4 | 8 |
| 7 | 5BKN|1|P | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 7 |
| 8 | 7M50|1|TT+7M50|1|kk | Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate | X-RAY DIFFRACTION | 2.31 | 7 |
| 9 | 8CX0|1|K | Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complex | ELECTRON MICROSCOPY | 2.7 | 8 |
| 10 | 5BKN|1|S+5BKN|1|h | Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride | X-RAY DIFFRACTION | 3 | 6 |