BGSU RNA Site //

Equivalence class NR_4.0_41742.2 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
17KGB|1|B (rep)5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9ELECTRON MICROSCOPY2.72022-01-19
27MT7|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70S with P and E site tRNAsELECTRON MICROSCOPY2.712022-02-02
37MT2|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70S initiation complexELECTRON MICROSCOPY2.762022-02-02
47MSM|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70SIC in complex with MtbEttA at Trans_R0 stateELECTRON MICROSCOPY2.792022-02-02
57MT3|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70S with P/E tRNAELECTRON MICROSCOPY2.82022-02-02
67S0S|1|i5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitELECTRON MICROSCOPY3.052022-03-30
77MSC|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70SIC in complex with MtbEttA at Pre_R0 stateELECTRON MICROSCOPY2.972022-02-02
85XYM|1|B5S ribosomal RNA5S RNAMycolicibacterium smegmatisBacteriaRF00001Large subunit of Mycobacterium smegmatisELECTRON MICROSCOPY3.082017-09-27
97MSZ|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70SIC in complex with MtbEttA at Trans_R1 stateELECTRON MICROSCOPY3.12022-02-02
105O60|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001Structure of the 50S large ribosomal subunit from Mycobacterium smegmatisELECTRON MICROSCOPY3.182017-07-12
117MSH|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70SIC in complex with MtbEttA at Pre_R1 stateELECTRON MICROSCOPY3.232022-02-02
126DZP|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitELECTRON MICROSCOPY3.422018-10-03
136DZI|1|B5S ribosomal RNA5S RNA (118-MER)Mycolicibacterium smegmatisBacteriaRF00001Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexELECTRON MICROSCOPY3.462018-09-26

Release history

Release3.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.236
Date2022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_41742.2NR_4.0_41742.13.224(12) 7MSZ|1|B, 7MSM|1|B, 7MSH|1|B, 7MSC|1|B, 7KGB|1|B, 6DZP|1|B, 6DZI|1|B, 5XYM|1|B, 5O60|1|B, 7MT7|1|B, 7MT3|1|B, 7MT2|1|B(1) 7S0S|1|i(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_41742.2NR_4.0_41742.33.237(13) 7MSC|1|B, 7KGB|1|B, 6DZP|1|B, 6DZI|1|B, 5XYM|1|B, 5O60|1|B, 7S0S|1|i, 7MT7|1|B, 7MT3|1|B, 7MT2|1|B, 7MSZ|1|B, 7MSM|1|B, 7MSH|1|B(0) (1) 7F0D|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15XYM|1|BLarge subunit of Mycobacterium smegmatisELECTRON MICROSCOPY3.08116
26DZP|1|BCryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitELECTRON MICROSCOPY3.42118
36DZI|1|BCryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexELECTRON MICROSCOPY3.46118
45O60|1|BStructure of the 50S large ribosomal subunit from Mycobacterium smegmatisELECTRON MICROSCOPY3.18118
57S0S|1|iM. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitELECTRON MICROSCOPY3.05118
67MSC|1|BMtb 70SIC in complex with MtbEttA at Pre_R0 stateELECTRON MICROSCOPY2.97115
77MSH|1|BMtb 70SIC in complex with MtbEttA at Pre_R1 stateELECTRON MICROSCOPY3.23115
87MT3|1|BMtb 70S with P/E tRNAELECTRON MICROSCOPY2.8115
97MT2|1|BMtb 70S initiation complexELECTRON MICROSCOPY2.76115
107MT7|1|BMtb 70S with P and E site tRNAsELECTRON MICROSCOPY2.71115
117MSM|1|BMtb 70SIC in complex with MtbEttA at Trans_R0 stateELECTRON MICROSCOPY2.79115
127MSZ|1|BMtb 70SIC in complex with MtbEttA at Trans_R1 stateELECTRON MICROSCOPY3.1115
137KGB|1|BCryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9ELECTRON MICROSCOPY2.7115