#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18FR8|1|B (rep)5S ribosomal RNA5S rRNA (118-MER)Mycolicibacterium smegmatis MC2 155BacteriaRF00001Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexElectron microscopy2.762023-05-17
27KGB|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9Electron microscopy2.72022-01-19
37MT7|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70S with P and E site tRNAsElectron microscopy2.712022-02-02
47MT2|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70S initiation complexElectron microscopy2.762022-02-02
57MSM|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70SIC in complex with MtbEttA at Trans_R0 stateElectron microscopy2.792022-02-02
67MT3|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70S with P/E tRNAElectron microscopy2.82022-02-02
78V9L|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)Electron microscopy32024-02-07
87S0S|1|i5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitElectron microscopy3.052022-03-30
97MSC|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70SIC in complex with MtbEttA at Pre_R0 stateElectron microscopy2.972022-02-02
108V9J|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)Electron microscopy3.12024-02-07
118V9K|1|B5S ribosomal RNA5S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)Electron microscopy3.12024-02-07
125XYM|1|B5S ribosomal RNA5S RNAMycolicibacterium smegmatisBacteriaRF00001Large subunit of Mycobacterium smegmatisElectron microscopy3.082017-09-27
137MSZ|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70SIC in complex with MtbEttA at Trans_R1 stateElectron microscopy3.12022-02-02
145O60|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001Structure of the 50S large ribosomal subunit from Mycobacterium smegmatisElectron microscopy3.182017-07-12
157MSH|1|B5S ribosomal RNA5S rRNAMycobacterium tuberculosis H37RvBacteriaRF00001Mtb 70SIC in complex with MtbEttA at Pre_R1 stateElectron microscopy3.232022-02-02
167XAM|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00001Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growthElectron microscopy3.52023-05-03
176DZP|1|B5S ribosomal RNA5S rRNAMycolicibacterium smegmatisBacteriaRF00001Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitElectron microscopy3.422018-10-03
186DZI|1|B5S ribosomal RNA5S RNA (118-MER)Mycolicibacterium smegmatisBacteriaRF00001Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexElectron microscopy3.462018-09-26
197F0D|1|B5S ribosomal RNA5S ribosomal RNAMycobacterium tuberculosis H37RaBacteriaRF00001Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycinElectron microscopy3.32022-06-29

Release history

Release3.3213.3223.323
Date2024-02-072024-02-142024-02-21

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18FR8|1|BStructure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexELECTRON MICROSCOPY2.76118
27S0S|1|iM. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunitELECTRON MICROSCOPY3.05118
35O60|1|BStructure of the 50S large ribosomal subunit from Mycobacterium smegmatisELECTRON MICROSCOPY3.18118
47XAM|1|BMycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growthELECTRON MICROSCOPY3.5118
58V9L|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)ELECTRON MICROSCOPY3118
68V9K|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)ELECTRON MICROSCOPY3.1118
78V9J|1|BCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)ELECTRON MICROSCOPY3.1118
86DZP|1|BCryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunitELECTRON MICROSCOPY3.42118
96DZI|1|BCryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexELECTRON MICROSCOPY3.46118
105XYM|1|BLarge subunit of Mycobacterium smegmatisELECTRON MICROSCOPY3.08116
117MSC|1|BMtb 70SIC in complex with MtbEttA at Pre_R0 stateELECTRON MICROSCOPY2.97115
127MSH|1|BMtb 70SIC in complex with MtbEttA at Pre_R1 stateELECTRON MICROSCOPY3.23115
137MT3|1|BMtb 70S with P/E tRNAELECTRON MICROSCOPY2.8115
147MT2|1|BMtb 70S initiation complexELECTRON MICROSCOPY2.76115
157MT7|1|BMtb 70S with P and E site tRNAsELECTRON MICROSCOPY2.71115
167MSM|1|BMtb 70SIC in complex with MtbEttA at Trans_R0 stateELECTRON MICROSCOPY2.79115
177MSZ|1|BMtb 70SIC in complex with MtbEttA at Trans_R1 stateELECTRON MICROSCOPY3.1115
187KGB|1|BCryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9ELECTRON MICROSCOPY2.7115
197F0D|1|BCryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycinELECTRON MICROSCOPY3.3115
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