#IFECompound(s)RNA source organismTitleMethodResolutionDate
13TD1|1|B+ 3TD1|1|A (rep)RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.12011-12-07
21YRJ|1|A+ 1YRJ|1|BBacterial 16 S Ribosomal RNA A Site OligonucleotideCrystal Structure of Apramycin bound to a Ribosomal RNA A site oligonucleotideX-RAY DIFFRACTION2.72005-06-07
34PDQ|1|A+ 4PDQ|1|BRNA (5'-*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C-3')Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analogX-RAY DIFFRACTION32015-01-07
42ESI|1|A+ 2ESI|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Kanamycin A and the 16S-Rrna A Site.X-RAY DIFFRACTION32005-12-20
52F4T|1|B+ 2F4T|1|A5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3', 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Asite RNA + designer antibioticX-RAY DIFFRACTION32006-05-02
62O3V|1|A+ 2O3V|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with paromamine derivative NB33X-RAY DIFFRACTION2.82007-11-06
73BNS|1|A+ 3BNS|1|BA site of human mitochondrial ribosome, chain three, A site of human mitochondrial ribosome, chain twoCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-RAY DIFFRACTION1.92008-06-24
82G5K|1|A+ 2G5K|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3'Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with ApramycinX-RAY DIFFRACTION2.82006-06-20
93BNR|1|A+ 3BNR|1|BA site of human mitochondrial ribosome, chain one, A site of human mitochondrial ribosome, chain twoCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-RAY DIFFRACTION2.12008-06-24
102O3Y|1|A+ 2O3Y|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site in Presence of Paromamine Derivative NB30X-RAY DIFFRACTION2.72007-11-06
112O3W|1|A+ 2O3W|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site in presence of paromomycinX-RAY DIFFRACTION2.82007-11-06
123BNQ|1|A+ 3BNQ|1|BA site of human mitochondrial ribosome, A chainCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-RAY DIFFRACTION22008-06-24
134GPY|1|A+ 4GPY|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with 6'-hydroxysisomicinX-RAY DIFFRACTION2.82013-04-03
142FQN|1|A+ 2FQN|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A siteX-RAY DIFFRACTION2.32006-02-14
154GPW|1|A+ 4GPW|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P21212 form)X-RAY DIFFRACTION32013-04-03
163TD0|1|B+ 3TD0|1|ARNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding siteX-RAY DIFFRACTION1.62011-12-07
174K31|1|B+ 4K31|1|CRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of apramycin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION1.412013-07-31
183BNR|1|C+ 3BNR|1|DA site of human mitochondrial ribosome, chain one, A site of human mitochondrial ribosome, chain threeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)X-RAY DIFFRACTION2.12008-06-24
193BNQ|1|C+ 3BNQ|1|DA site of human mitochondrial ribosome, A chain, A site of human mitochondrial ribosome, B chainCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of SrCl2 (A1555G mutant, Br-derivative)X-RAY DIFFRACTION22008-06-24
203BNS|1|C+ 3BNS|1|DA site of human mitochondrial ribosome, chain threeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (A1555G mutant, Br-derivative)X-RAY DIFFRACTION1.92008-06-24
214WCR|1|A+ 4WCR|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with paromomycinX-RAY DIFFRACTION3.52015-09-09
221LC4|1|A+ 1LC4|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal Structure of Tobramycin Bound to the Eubacterial 16S rRNA A SiteX-RAY DIFFRACTION2.542003-04-08
233WRU|1|A+ 3WRU|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with synthetic aminoglycoside with F-HABA groupX-RAY DIFFRACTION2.32014-11-05
244WCQ|1|A+ 4WCQ|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.12015-09-09
254WCS|1|A+ 4WCS|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site in the presence of gentamicinX-RAY DIFFRACTION3.12015-09-09
262O3X|1|A+ 2O3X|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal Structure of the Prokaryotic Ribosomal Decoding Site Complexed with Paromamine Derivative NB30X-RAY DIFFRACTION2.92007-11-06
274P20|1|A+ 4P20|1|B5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structures of the bacterial ribosomal decoding site complexed with amikacinX-RAY DIFFRACTION2.72014-05-07
284K32|1|A+ 4K32|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of geneticin bound to the leishmanial rRNA A-siteX-RAY DIFFRACTION2.52013-07-31
294GPX|1|A+ 4GPX|1|BRNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the protozoal cytoplasmic ribosomal decoding site in complex with 6'-hydroxysisomicin (P212121 form)X-RAY DIFFRACTION2.62013-04-03
304P3S|1|B+ 4P3S|1|A5'-R(*UP*UP*GP*CP*GP*UP*CP*CP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structure of the bacterial A1408C-mutant ribosomal decoding site in complex with geneticinX-RAY DIFFRACTION2.32016-05-04

Release history

Release2.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_43554.4NR_4.0_38099.12.93(6) 3BNS|1|A+3BNS|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNR|1|A+3BNR|1|B, 3BNS|1|C+3BNS|1|D, 3BNQ|1|A+3BNQ|1|B, 3BNR|1|C+3BNR|1|D(24) 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4WCR|1|A+4WCR|1|B, 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 3TD0|1|B+3TD0|1|A, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4WCQ|1|A+4WCQ|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4PDQ|1|A+4PDQ|1|B, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 4GPY|1|A+4GPY|1|B, 4P3S|1|B+4P3S|1|A, 4WCS|1|A+4WCS|1|B, 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 3TD1|1|B+3TD1|1|A(0)
NR_4.0_43554.4NR_4.0_48589.12.93(1) 2O3V|1|A+2O3V|1|B(29) 2ESI|1|A+2ESI|1|B, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4WCQ|1|A+4WCQ|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4PDQ|1|A+4PDQ|1|B, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4P3S|1|B+4P3S|1|A, 4WCS|1|A+4WCS|1|B, 2F4T|1|B+2F4T|1|A, 2O3X|1|A+2O3X|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4WCR|1|A+4WCR|1|B(0)
NR_4.0_43554.4NR_4.0_52761.12.93(1) 3TD0|1|B+3TD0|1|A(29) 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4PDQ|1|A+4PDQ|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3X|1|A+2O3X|1|B, 3BNR|1|A+3BNR|1|B, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4P3S|1|B+4P3S|1|A, 4WCS|1|A+4WCS|1|B, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4WCR|1|A+4WCR|1|B, 2F4T|1|B+2F4T|1|A, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4WCQ|1|A+4WCQ|1|B, 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B(0)
NR_4.0_43554.4NR_4.0_54657.12.93(4) 2G5K|1|A+2G5K|1|B, 2O3W|1|A+2O3W|1|B, 2FQN|1|A+2FQN|1|B, 2O3Y|1|A+2O3Y|1|B(26) 4PDQ|1|A+4PDQ|1|B, 1LC4|1|A+1LC4|1|B, 2O3V|1|A+2O3V|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4WCR|1|A+4WCR|1|B, 2ESI|1|A+2ESI|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4P3S|1|B+4P3S|1|A, 4WCS|1|A+4WCS|1|B, 2F4T|1|B+2F4T|1|A, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4WCQ|1|A+4WCQ|1|B, 1YRJ|1|A+1YRJ|1|B, 2O3X|1|A+2O3X|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B(0)
NR_4.0_43554.4NR_4.0_77275.12.93(1) 4K31|1|B+4K31|1|C(29) 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4P3S|1|B+4P3S|1|A, 4WCS|1|A+4WCS|1|B, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3X|1|A+2O3X|1|B, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4P20|1|A+4P20|1|B, 4WCR|1|A+4WCR|1|B, 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K32|1|A+4K32|1|B, 4WCQ|1|A+4WCQ|1|B, 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4PDQ|1|A+4PDQ|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 2O3Y|1|A+2O3Y|1|B(0)
NR_4.0_43554.4NR_4.0_82951.12.93(1) 2O3X|1|A+2O3X|1|B(29) 2F4T|1|B+2F4T|1|A, 2O3W|1|A+2O3W|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 4GPX|1|A+4GPX|1|B, 4P20|1|A+4P20|1|B, 4WCR|1|A+4WCR|1|B, 2ESI|1|A+2ESI|1|B, 2O3V|1|A+2O3V|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D, 4GPW|1|A+4GPW|1|B, 4K32|1|A+4K32|1|B, 4WCQ|1|A+4WCQ|1|B, 1YRJ|1|A+1YRJ|1|B, 2G5K|1|A+2G5K|1|B, 3BNQ|1|A+3BNQ|1|B, 3BNS|1|A+3BNS|1|B, 3WRU|1|A+3WRU|1|B, 4K31|1|B+4K31|1|C, 4PDQ|1|A+4PDQ|1|B, 1LC4|1|A+1LC4|1|B, 2FQN|1|A+2FQN|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNR|1|C+3BNR|1|D, 3TD1|1|B+3TD1|1|A, 4GPY|1|A+4GPY|1|B, 4P3S|1|B+4P3S|1|A, 4WCS|1|A+4WCS|1|B(1) 2F4S|1|A+2F4S|1|B
NR_4.0_43554.4NR_4.0_97151.12.93(16) 4WCQ|1|A+4WCQ|1|B, 4P20|1|A+4P20|1|B, 4K32|1|A+4K32|1|B, 1LC4|1|A+1LC4|1|B, 4WCS|1|A+4WCS|1|B, 4P3S|1|B+4P3S|1|A, 4PDQ|1|A+4PDQ|1|B, 3WRU|1|A+3WRU|1|B, 4GPX|1|A+4GPX|1|B, 4WCR|1|A+4WCR|1|B, 3TD1|1|B+3TD1|1|A, 4GPW|1|A+4GPW|1|B, 2F4T|1|B+2F4T|1|A, 2ESI|1|A+2ESI|1|B, 4GPY|1|A+4GPY|1|B, 1YRJ|1|A+1YRJ|1|B(14) 3BNR|1|C+3BNR|1|D, 3BNQ|1|A+3BNQ|1|B, 3BNR|1|A+3BNR|1|B, 3TD0|1|B+3TD0|1|A, 2FQN|1|A+2FQN|1|B, 3BNS|1|A+3BNS|1|B, 4K31|1|B+4K31|1|C, 2G5K|1|A+2G5K|1|B, 2O3V|1|A+2O3V|1|B, 2O3X|1|A+2O3X|1|B, 2O3W|1|A+2O3W|1|B, 2O3Y|1|A+2O3Y|1|B, 3BNQ|1|C+3BNQ|1|D, 3BNS|1|C+3BNS|1|D(18) 3S4P|1|A+3S4P|1|B, 5BXK|1|C+5BXK|1|D, 4F8V|1|A+4F8V|1|B, 2ET5|1|A+2ET5|1|B, 2PWT|1|A+2PWT|1|B, 2BEE|1|A+2BEE|1|B, 2ET4|1|A+2ET4|1|B, 2ESJ|1|A+2ESJ|1|B, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4F8U|1|A+4F8U|1|B, 1J7T|1|A+1J7T|1|B, 3BNL|1|A+3BNL|1|B, 5BWS|1|A+5BWS|1|B, 2ET3|1|A+2ET3|1|B, 1MWL|1|A+1MWL|1|B, 5BWS|1|C+5BWS|1|D, 2BE0|1|A+2BE0|1|B, 5BXK|1|A+5BXK|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength