Equivalence class NR_4.0_45930.1 Current
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 6CAP|1|W+ 6CAP|1|Y (rep) | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-RAY DIFFRACTION | 3.4 | 2018-07-25 | |
| 2 | 6CAQ|1|W+ 6CAQ|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-RAY DIFFRACTION | 3.4 | 2018-07-25 | |
| 3 | 4DR4|1|W+ 4DR4|1|V | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*U)-3' | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound | X-RAY DIFFRACTION | 3.97 | 2012-11-14 | |
| 4 | 1IBL|1|Y+ 1IBL|1|Z | ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA, A-SITE MESSENGER RNA FRAGMENT | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-RAY DIFFRACTION | 3.11 | 2001-05-04 | |
| 5 | 6CAO|1|W+ 6CAO|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Structure of the ribosomal decoding complex at ambient temperature | X-RAY DIFFRACTION | 3.45 | 2018-07-25 | |
| 6 | 1IBM|1|Y+ 1IBM|1|Z | ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA, A-SITE MESSENGER RNA FRAGMENT | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-RAY DIFFRACTION | 3.31 | 2001-05-04 | |
| 7 | 6CAS|1|W+ 6CAS|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS | X-RAY DIFFRACTION | 3.5 | 2018-07-25 | |
| 8 | 4DR5|1|W+ 4DR5|1|V | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*U)-3' | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound | X-RAY DIFFRACTION | 3.45 | 2012-11-14 | |
| 9 | 6CAR|1|W+ 6CAR|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-RAY DIFFRACTION | 3.4 | 2018-07-25 | |
| 10 | 4AQY|1|Z+ 4AQY|1|W | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*CP*AP*AP*AP)-3' | Structure of ribosome-apramycin complexes | X-RAY DIFFRACTION | 3.5 | 2012-07-18 |
Release history
| Release | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4DR4|1|W+4DR4|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound | X-RAY DIFFRACTION | 3.97 | 15 |
| 2 | 6CAS|1|W+6CAS|1|Y | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS | X-RAY DIFFRACTION | 3.5 | 15 |
| 3 | 6CAQ|1|W+6CAQ|1|Y | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-RAY DIFFRACTION | 3.4 | 15 |
| 4 | 6CAP|1|W+6CAP|1|Y | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-RAY DIFFRACTION | 3.4 | 15 |
| 5 | 6CAR|1|W+6CAR|1|Y | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-RAY DIFFRACTION | 3.4 | 15 |
| 6 | 6CAO|1|W+6CAO|1|Y | Structure of the ribosomal decoding complex at ambient temperature | X-RAY DIFFRACTION | 3.45 | 15 |
| 7 | 1IBM|1|Y+1IBM|1|Z | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-RAY DIFFRACTION | 3.31 | 11 |
| 8 | 4DR5|1|W+4DR5|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound | X-RAY DIFFRACTION | 3.45 | 15 |
| 9 | 1IBL|1|Y+1IBL|1|Z | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-RAY DIFFRACTION | 3.11 | 15 |
| 10 | 4AQY|1|Z+4AQY|1|W | Structure of ribosome-apramycin complexes | X-RAY DIFFRACTION | 3.5 | 15 |