BGSU RNA Site

Equivalence class NR_4.0_45930.1 Current

#IFECompound(s)RNA source organismTitleMethodResolutionDate
16CAP|1|W+ 6CAP|1|Y (rep)RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with SisomicinX-RAY DIFFRACTION3.42018-07-25
26CAQ|1|W+ 6CAQ|1|YRNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')Crystal Structure of 30S ribosomal subunit from Thermus thermophilusX-RAY DIFFRACTION3.42018-07-25
34DR4|1|W+ 4DR4|1|V5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*U)-3'Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules boundX-RAY DIFFRACTION3.972012-11-14
41IBL|1|Y+ 1IBL|1|ZANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA, A-SITE MESSENGER RNA FRAGMENTSTRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCINX-RAY DIFFRACTION3.112001-05-04
56CAO|1|W+ 6CAO|1|YRNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')Structure of the ribosomal decoding complex at ambient temperatureX-RAY DIFFRACTION3.452018-07-25
61IBM|1|Y+ 1IBM|1|ZANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA, A-SITE MESSENGER RNA FRAGMENTSTRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITEX-RAY DIFFRACTION3.312001-05-04
76CAS|1|W+ 6CAS|1|YRNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MSX-RAY DIFFRACTION3.52018-07-25
84DR5|1|W+ 4DR5|1|V5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*U)-3'Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin boundX-RAY DIFFRACTION3.452012-11-14
96CAR|1|W+ 6CAR|1|YRNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with SisomicinX-RAY DIFFRACTION3.42018-07-25
104AQY|1|Z+ 4AQY|1|W5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*CP*AP*AP*AP)-3'Structure of ribosome-apramycin complexesX-RAY DIFFRACTION3.52012-07-18

Release history

Release3.753.763.773.783.793.803.813.823.833.843.853.863.873.883.89
Date2019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_45930.1NR_4.0_14071.13.75(1) 6CAS|1|W+6CAS|1|Y(9) 6CAR|1|W+6CAR|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAO|1|W+6CAO|1|Y, 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z(0)
NR_4.0_45930.1NR_4.0_33196.13.75(1) 6CAQ|1|W+6CAQ|1|Y(9) 6CAS|1|W+6CAS|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAO|1|W+6CAO|1|Y, 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z(0)
NR_4.0_45930.1NR_4.0_81929.13.75(1) 6CAO|1|W+6CAO|1|Y(9) 6CAS|1|W+6CAS|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAP|1|W+6CAP|1|Y, 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z(0)
NR_4.0_45930.1NR_4.0_82626.13.75(1) 6CAR|1|W+6CAR|1|Y(9) 6CAS|1|W+6CAS|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAO|1|W+6CAO|1|Y, 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z(0)
NR_4.0_45930.1NR_4.0_90628.13.75(1) 6CAP|1|W+6CAP|1|Y(9) 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z, 6CAS|1|W+6CAS|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAO|1|W+6CAO|1|Y(0)
NR_4.0_45930.1NR_4.0_99963.13.75(5) 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z(5) 6CAS|1|W+6CAS|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAO|1|W+6CAO|1|Y(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14DR4|1|W+4DR4|1|VCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules boundX-RAY DIFFRACTION3.9715
26CAS|1|W+6CAS|1|YSerial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MSX-RAY DIFFRACTION3.515
36CAQ|1|W+6CAQ|1|YCrystal Structure of 30S ribosomal subunit from Thermus thermophilusX-RAY DIFFRACTION3.415
46CAP|1|W+6CAP|1|YCrystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with SisomicinX-RAY DIFFRACTION3.415
56CAR|1|W+6CAR|1|YSerial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with SisomicinX-RAY DIFFRACTION3.415
66CAO|1|W+6CAO|1|YStructure of the ribosomal decoding complex at ambient temperatureX-RAY DIFFRACTION3.4515
71IBM|1|Y+1IBM|1|ZSTRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITEX-RAY DIFFRACTION3.3111
84DR5|1|W+4DR5|1|VCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin boundX-RAY DIFFRACTION3.4515
91IBL|1|Y+1IBL|1|ZSTRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCINX-RAY DIFFRACTION3.1115
104AQY|1|Z+4AQY|1|WStructure of ribosome-apramycin complexesX-RAY DIFFRACTION3.515