BGSU RNA Site //

Equivalence class NR_4.0_45930.1 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
16CAP|1|W+ 6CAP|1|Y (rep)RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')Thermus thermophilusBacteriaCrystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with SisomicinX-RAY DIFFRACTION3.42018-07-25
26CAQ|1|W+ 6CAQ|1|YRNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')Thermus thermophilusBacteriaCrystal Structure of 30S ribosomal subunit from Thermus thermophilusX-RAY DIFFRACTION3.42018-07-25
34DR4|1|W+ 4DR4|1|V5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*U)-3'Thermus thermophilusBacteriaCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules boundX-RAY DIFFRACTION3.972012-11-14
41IBL|1|Y+ 1IBL|1|ZANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA, A-SITE MESSENGER RNA FRAGMENTSTRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCINX-RAY DIFFRACTION3.112001-05-04
56CAO|1|W+ 6CAO|1|YRNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')Thermus thermophilusBacteriaStructure of the ribosomal decoding complex at ambient temperatureX-RAY DIFFRACTION3.452018-07-25
61IBM|1|Y+ 1IBM|1|ZANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA, A-SITE MESSENGER RNA FRAGMENTSTRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITEX-RAY DIFFRACTION3.312001-05-04
76CAS|1|W+ 6CAS|1|YRNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')Thermus thermophilusBacteriaSerial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MSX-RAY DIFFRACTION3.52018-07-25
84DR5|1|W+ 4DR5|1|V5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*U)-3'Thermus thermophilusBacteriaCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin boundX-RAY DIFFRACTION3.452012-11-14
96CAR|1|W+ 6CAR|1|YRNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')Thermus thermophilusBacteriaSerial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with SisomicinX-RAY DIFFRACTION3.42018-07-25
104AQY|1|Z+ 4AQY|1|W5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*CP*AP*AP*AP)-3'Thermus thermophilusBacteriaStructure of ribosome-apramycin complexesX-RAY DIFFRACTION3.52012-07-18

Release history

Release3.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.212
Date2019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_45930.1NR_4.0_14071.13.75(1) 6CAS|1|W+6CAS|1|Y(9) 6CAR|1|W+6CAR|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAO|1|W+6CAO|1|Y, 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z(0)
NR_4.0_45930.1NR_4.0_33196.13.75(1) 6CAQ|1|W+6CAQ|1|Y(9) 6CAS|1|W+6CAS|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAO|1|W+6CAO|1|Y, 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z(0)
NR_4.0_45930.1NR_4.0_81929.13.75(1) 6CAO|1|W+6CAO|1|Y(9) 6CAS|1|W+6CAS|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAP|1|W+6CAP|1|Y, 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z(0)
NR_4.0_45930.1NR_4.0_82626.13.75(1) 6CAR|1|W+6CAR|1|Y(9) 6CAS|1|W+6CAS|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAO|1|W+6CAO|1|Y, 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z(0)
NR_4.0_45930.1NR_4.0_90628.13.75(1) 6CAP|1|W+6CAP|1|Y(9) 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z, 6CAS|1|W+6CAS|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAO|1|W+6CAO|1|Y(0)
NR_4.0_45930.1NR_4.0_99963.13.75(5) 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z(5) 6CAS|1|W+6CAS|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAO|1|W+6CAO|1|Y(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_45930.1NR_4.0_45930.23.213(10) 1IBM|1|Y+1IBM|1|Z, 6CAO|1|W+6CAO|1|Y, 6CAS|1|W+6CAS|1|Y, 1IBL|1|Y+1IBL|1|Z, 4DR5|1|W+4DR5|1|V, 6CAR|1|W+6CAR|1|Y, 4DR4|1|W+4DR4|1|V, 6CAQ|1|W+6CAQ|1|Y, 4AQY|1|Z+4AQY|1|W, 6CAP|1|W+6CAP|1|Y(0) (4) 7DUI|1|W+7DUI|1|Y, 7DUG|1|W+7DUG|1|Y, 7DUK|1|W+7DUK|1|Y, 7DUJ|1|W+7DUJ|1|Y

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14DR4|1|W+4DR4|1|VCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules boundX-RAY DIFFRACTION3.9715
26CAS|1|W+6CAS|1|YSerial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MSX-RAY DIFFRACTION3.515
36CAQ|1|W+6CAQ|1|YCrystal Structure of 30S ribosomal subunit from Thermus thermophilusX-RAY DIFFRACTION3.415
46CAP|1|W+6CAP|1|YCrystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with SisomicinX-RAY DIFFRACTION3.415
56CAR|1|W+6CAR|1|YSerial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with SisomicinX-RAY DIFFRACTION3.415
66CAO|1|W+6CAO|1|YStructure of the ribosomal decoding complex at ambient temperatureX-RAY DIFFRACTION3.4515
71IBM|1|Y+1IBM|1|ZSTRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITEX-RAY DIFFRACTION3.3111
84DR5|1|W+4DR5|1|VCrystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin boundX-RAY DIFFRACTION3.4515
91IBL|1|Y+1IBL|1|ZSTRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCINX-RAY DIFFRACTION3.1115
104AQY|1|Z+4AQY|1|WStructure of ribosome-apramycin complexesX-RAY DIFFRACTION3.515