Equivalence class NR_4.0_45930.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6CAP|1|W+ 6CAP|1|Y (rep) | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-ray diffraction | 3.4 | 2018-07-25 | ||
| 2 | 7DUI|1|W+ 7DUI|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound | X-ray diffraction | 3.62 | 2022-01-12 | ||
| 3 | 7DUL|1|W+ 7DUL|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound | X-ray diffraction | 3.62 | 2022-01-26 | ||
| 4 | 6CAQ|1|W+ 6CAQ|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-ray diffraction | 3.4 | 2018-07-25 | ||
| 5 | 4DR4|1|W+ 4DR4|1|V | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*U)-3' | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound | X-ray diffraction | 3.97 | 2012-11-14 | ||
| 6 | 1IBL|1|Y+ 1IBL|1|Z | ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA, A-SITE MESSENGER RNA FRAGMENT | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-ray diffraction | 3.11 | 2001-05-04 | ||||
| 7 | 6CAO|1|W+ 6CAO|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Structure of the ribosomal decoding complex at ambient temperature | X-ray diffraction | 3.45 | 2018-07-25 | ||
| 8 | 1IBM|1|Y+ 1IBM|1|Z | ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA, A-SITE MESSENGER RNA FRAGMENT | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-ray diffraction | 3.31 | 2001-05-04 | ||||
| 9 | 6CAS|1|W+ 6CAS|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS | X-ray diffraction | 3.5 | 2018-07-25 | ||
| 10 | 4DR5|1|W+ 4DR5|1|V | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*U)-3' | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound | X-ray diffraction | 3.45 | 2012-11-14 | ||
| 11 | 6CAR|1|W+ 6CAR|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-ray diffraction | 3.4 | 2018-07-25 | ||
| 12 | 4AQY|1|Z+ 4AQY|1|W | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*CP*AP*AP*AP)-3' | Thermus thermophilus | Bacteria | Structure of ribosome-apramycin complexes | X-ray diffraction | 3.5 | 2012-07-18 | ||
| 13 | 7DUK|1|W+ 7DUK|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound | X-ray diffraction | 3.6 | 2022-01-12 | ||
| 14 | 7DUG|1|W+ 7DUG|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(UPUPUPUPUPU)-3') | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound | X-ray diffraction | 3.75 | 2022-01-12 | ||
| 15 | 7DUJ|1|W+ 7DUJ|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound | X-ray diffraction | 3.75 | 2022-01-12 | ||
| 16 | 7DUH|1|W | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3') | Thermus thermophilus | Bacteria | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound | X-ray diffraction | 3.75 | 2022-01-26 |
Release history
| Release | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_45930.3 | NR_4.0_45930.2 | 3.215 | (14) 6CAP|1|W+6CAP|1|Y, 6CAO|1|W+6CAO|1|Y, 4DR5|1|W+4DR5|1|V, 4DR4|1|W+4DR4|1|V, 4AQY|1|Z+4AQY|1|W, 1IBM|1|Y+1IBM|1|Z, 1IBL|1|Y+1IBL|1|Z, 7DUK|1|W+7DUK|1|Y, 7DUJ|1|W+7DUJ|1|Y, 7DUI|1|W+7DUI|1|Y, 7DUG|1|W+7DUG|1|Y, 6CAS|1|W+6CAS|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAQ|1|W+6CAQ|1|Y | (2) 7DUH|1|W, 7DUL|1|W+7DUL|1|Y | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4DR4|1|W+4DR4|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound | X-RAY DIFFRACTION | 3.97 | 15 |
| 2 | 6CAR|1|W+6CAR|1|Y | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-RAY DIFFRACTION | 3.4 | 15 |
| 3 | 6CAS|1|W+6CAS|1|Y | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS | X-RAY DIFFRACTION | 3.5 | 15 |
| 4 | 6CAQ|1|W+6CAQ|1|Y | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-RAY DIFFRACTION | 3.4 | 15 |
| 5 | 6CAP|1|W+6CAP|1|Y | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-RAY DIFFRACTION | 3.4 | 15 |
| 6 | 7DUK|1|W+7DUK|1|Y | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound | X-RAY DIFFRACTION | 3.6 | 15 |
| 7 | 7DUI|1|W+7DUI|1|Y | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound | X-RAY DIFFRACTION | 3.62 | 15 |
| 8 | 7DUG|1|W+7DUG|1|Y | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound | X-RAY DIFFRACTION | 3.75 | 15 |
| 9 | 7DUL|1|W+7DUL|1|Y | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound | X-RAY DIFFRACTION | 3.62 | 15 |
| 10 | 7DUJ|1|W+7DUJ|1|Y | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound | X-RAY DIFFRACTION | 3.75 | 15 |
| 11 | 7DUH|1|W | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound | X-RAY DIFFRACTION | 3.75 | 15 |
| 12 | 6CAO|1|W+6CAO|1|Y | Structure of the ribosomal decoding complex at ambient temperature | X-RAY DIFFRACTION | 3.45 | 15 |
| 13 | 1IBM|1|Y+1IBM|1|Z | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-RAY DIFFRACTION | 3.31 | 11 |
| 14 | 4DR5|1|W+4DR5|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound | X-RAY DIFFRACTION | 3.45 | 15 |
| 15 | 1IBL|1|Y+1IBL|1|Z | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-RAY DIFFRACTION | 3.11 | 15 |
| 16 | 4AQY|1|Z+4AQY|1|W | Structure of ribosome-apramycin complexes | X-RAY DIFFRACTION | 3.5 | 15 |