Equivalence class NR_4.0_51779.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1Z7F|1|A (rep) | 5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of 16 base pair RNA duplex containing a C-A mismatch | X-ray diffraction | 2.1 | 2005-10-18 | ||||
| 2 | 405D|1|A+ 405D|1|B | RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3') | STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES | X-ray diffraction | 2.5 | 1999-01-13 | ||||
| 3 | 1Z79|1|A+ 1Z79|1|B | RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-ray diffraction | 2.55 | 2005-10-18 | ||||
| 4 | 1YY0|1|A+ 1YY0|1|B | 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', 5'-R(*GP*CP*AP*GP*AP*(M5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-ray diffraction | 3.2 | 2005-10-18 | ||||
| 5 | 1YRM|1|A+ 1YRM|1|B | DNA/RNA (5'-R(*GP*CP*AP*GP*A)-D(P*(A5M))-R(P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3') | Crystal Structure of an RNA duplex containing site specific 2'-amine substitutions at a C-A mismatch | X-ray diffraction | 2.5 | 2005-10-18 | ||||
| 6 | 1YY0|1|C | 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-ray diffraction | 3.2 | 2005-10-18 | ||||
| 7 | 1YRM|1|C | DNA/RNA (5'-R(*GP*CP*AP*GP*A)-D(P*(A5M))-R(P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3') | Crystal Structure of an RNA duplex containing site specific 2'-amine substitutions at a C-A mismatch | X-ray diffraction | 2.5 | 2005-10-18 | ||||
| 8 | 1Z79|1|C | RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-ray diffraction | 2.55 | 2005-10-18 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_51779.2 | NR_4.0_51779.1 | 2.124 | (6) 405D|1|A+405D|1|B, 1Z7F|1|A, 1Z79|1|C, 1Z79|1|A+1Z79|1|B, 1YY0|1|C, 1YY0|1|A+1YY0|1|B | (2) 1YRM|1|C, 1YRM|1|A+1YRM|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_51779.2 | NR_4.0_51779.3 | 2.132 | (6) 1Z7F|1|A, 1YY0|1|A+1YY0|1|B, 405D|1|A+405D|1|B, 1YY0|1|C, 1Z79|1|A+1Z79|1|B, 1Z79|1|C | (2) 1YRM|1|A+1YRM|1|B, 1YRM|1|C | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1YRM|1|A+1YRM|1|B | Crystal Structure of an RNA duplex containing site specific 2'-amine substitutions at a C-A mismatch | X-RAY DIFFRACTION | 2.5 | 15 |
| 2 | 1Z79|1|A+1Z79|1|B | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-RAY DIFFRACTION | 2.55 | 15 |
| 3 | 1YY0|1|A+1YY0|1|B | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-RAY DIFFRACTION | 3.2 | 15 |
| 4 | 1YY0|1|C | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-RAY DIFFRACTION | 3.2 | 15 |
| 5 | 1Z7F|1|A | Crystal structure of 16 base pair RNA duplex containing a C-A mismatch | X-RAY DIFFRACTION | 2.1 | 16 |
| 6 | 1Z79|1|C | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-RAY DIFFRACTION | 2.55 | 15 |
| 7 | 1YRM|1|C | Crystal Structure of an RNA duplex containing site specific 2'-amine substitutions at a C-A mismatch | X-RAY DIFFRACTION | 2.5 | 15 |
| 8 | 405D|1|A+405D|1|B | STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES | X-RAY DIFFRACTION | 2.5 | 16 |