Equivalence class NR_4.0_51779.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1Z7F|1|A (rep) | 5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of 16 base pair RNA duplex containing a C-A mismatch | X-ray diffraction | 2.1 | 2005-10-18 | ||||
| 2 | 405D|1|A+ 405D|1|B | RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3') | STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES | X-ray diffraction | 2.5 | 1999-01-13 | ||||
| 3 | 1Z79|1|A+ 1Z79|1|B | RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-ray diffraction | 2.55 | 2005-10-18 | ||||
| 4 | 1YY0|1|A+ 1YY0|1|B | 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', 5'-R(*GP*CP*AP*GP*AP*(M5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-ray diffraction | 3.2 | 2005-10-18 | ||||
| 5 | 1Z79|1|C | RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-ray diffraction | 2.55 | 2005-10-18 | ||||
| 6 | 1YY0|1|C | 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-ray diffraction | 3.2 | 2005-10-18 |
Release history
| Release | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_51779.3 | NR_4.0_51779.2 | 2.132 | (6) 1YY0|1|C, 1Z7F|1|A, 1Z79|1|A+1Z79|1|B, 405D|1|A+405D|1|B, 1Z79|1|C, 1YY0|1|A+1YY0|1|B | (0) | (2) 1YRM|1|A+1YRM|1|B, 1YRM|1|C |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_51779.3 | NR_4.0_51779.4 | 2.153 | (6) 405D|1|A+405D|1|B, 1Z7F|1|A, 1Z79|1|C, 1Z79|1|A+1Z79|1|B, 1YY0|1|C, 1YY0|1|A+1YY0|1|B | (0) | (2) 1YRM|1|C, 1YRM|1|A+1YRM|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 405D|1|A+405D|1|B | STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES | X-RAY DIFFRACTION | 2.5 | 16 |
| 2 | 1Z7F|1|A | Crystal structure of 16 base pair RNA duplex containing a C-A mismatch | X-RAY DIFFRACTION | 2.1 | 16 |
| 3 | 1Z79|1|C | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-RAY DIFFRACTION | 2.55 | 15 |
| 4 | 1YY0|1|C | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-RAY DIFFRACTION | 3.2 | 15 |
| 5 | 1YY0|1|A+1YY0|1|B | Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatch | X-RAY DIFFRACTION | 3.2 | 15 |
| 6 | 1Z79|1|A+1Z79|1|B | Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) | X-RAY DIFFRACTION | 2.55 | 15 |