Equivalence class NR_4.0_60848.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7EZ2|1|N (rep) | Group I catalytic intron | Holo L-16 ScaI Tetrahymena ribozyme S1, Holo L-16 ScaI Tetrahymena ribozyme S2, Holo L-16 ScaI Tetrahymena ribozyme | Tetrahymena thermophila | Eukarya | RF00028 | Holo L-16 ScaI Tetrahymena ribozyme | Electron microscopy | 3.05 | 2021-08-25 |
| 2 | 7XSN|1|N | Group I catalytic intron | RNA (387-MER) | Tetrahymena thermophila | Eukarya | RF00028 | Native Tetrahymena ribozyme conformation | Electron microscopy | 3.01 | 2022-08-03 |
| 3 | 7EZ0|1|N | Group I catalytic intron | Apo L-21 ScaI Tetrahymena ribozyme | Tetrahymena thermophila | Eukarya | RF00028 | Apo L-21 ScaI Tetrahymena ribozyme | Electron microscopy | 3.14 | 2021-08-25 |
| 4 | 7R6L|1|A | Group I catalytic intron | Group I intron, 5 prime fragment, Group I intron, 3 prime fragment plus 3 prime exon | Tetrahymena thermophila | Eukarya | RF00028 | 5 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct | Electron microscopy | 2.85 | 2022-05-04 |
| 5 | 7XSK|1|N | Group I catalytic intron | RNA (388-MER) | Tetrahymena thermophila | Eukarya | RF00028 | Misfolded Tetrahymena ribozyme conformation 1 | Electron microscopy | 3.53 | 2022-08-03 |
| 6 | 7R6M|1|A | Group I catalytic intron | Group I intron, Ligated exon mimic of the Group I intron | Tetrahymena thermophila | Eukarya | RF00028 | Post-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct | Electron microscopy | 3.68 | 2022-05-04 |
| 7 | 7UVT|1|A | Group I catalytic intron | RNA (386-MER) | Tetrahymena thermophila | Eukarya | RF00028 | Kinetically trapped misfolded state of the Tetrahymena ribozyme | Electron microscopy | 3.9 | 2022-08-31 |
| 8 | 7XSL|1|N | Group I catalytic intron | RNA (388-MER) | Tetrahymena thermophila | Eukarya | RF00028 | Misfolded Tetrahymena ribozyme conformation 2 | Electron microscopy | 3.84 | 2022-08-03 |
Release history
| Release | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_60848.2 | NR_4.0_69141.1 | 3.276 | (8) 7R6M|1|A, 7UVT|1|A, 7XSK|1|N, 7XSN|1|N, 7EZ0|1|N, 7EZ2|1|N, 7R6L|1|A, 7XSL|1|N | (0) | (11) 7XD4|1|N, 7YGB|1|N, 8I7N|1|N, 7YGA|1|N, 7XD7|1|N, 7YGC|1|N, 8HD7|1|N, 7YG9|1|N, 8HD6|1|N, 7YG8|1|N, 7YGD|1|N |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7UVT|1|A | Kinetically trapped misfolded state of the Tetrahymena ribozyme | ELECTRON MICROSCOPY | 3.9 | 386 |
| 2 | 7XSK|1|N | Misfolded Tetrahymena ribozyme conformation 1 | ELECTRON MICROSCOPY | 3.53 | 388 |
| 3 | 7XSL|1|N | Misfolded Tetrahymena ribozyme conformation 2 | ELECTRON MICROSCOPY | 3.84 | 388 |
| 4 | 7XSN|1|N | Native Tetrahymena ribozyme conformation | ELECTRON MICROSCOPY | 3.01 | 387 |
| 5 | 7EZ0|1|N | Apo L-21 ScaI Tetrahymena ribozyme | ELECTRON MICROSCOPY | 3.14 | 387 |
| 6 | 7EZ2|1|N | Holo L-16 ScaI Tetrahymena ribozyme | ELECTRON MICROSCOPY | 3.05 | 392 |
| 7 | 7R6M|1|A | Post-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct | ELECTRON MICROSCOPY | 3.68 | 356 |
| 8 | 7R6L|1|A | 5 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric construct | ELECTRON MICROSCOPY | 2.85 | 343 |