NR_4.0_62979.1

Members (17)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Å	Date
1	2NR0\|1\|E (rep)	Transfer RNA	leucyl tRNA			RF00005	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA	X-ray diffraction	3.9	2007-05-15
2	2NR0\|1\|G	Transfer RNA	leucyl tRNA			RF00005	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA	X-ray diffraction	3.9	2007-05-15
3	2NR0\|1\|H	Transfer RNA	leucyl tRNA			RF00005	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA	X-ray diffraction	3.9	2007-05-15
4	2NRE\|1\|F	Transfer RNA	leucyl tRNA			RF00005	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA	X-ray diffraction	4	2007-05-15
5	4V8C\|1\|CB	Transfer RNA	TRNA-LEU, MRNA			RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
6	4V8B\|1\|AB	Transfer RNA	TRNA-LEU, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
7	2NR0\|1\|F	Transfer RNA	leucyl tRNA			RF00005	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA	X-ray diffraction	3.9	2007-05-15
8	4V8C\|1\|DB	Transfer RNA	TRNA-LEU, MRNA			RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
9	4WSM\|1\|2K	Transfer RNA	tRNA-Leu, mRNA	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-ray diffraction	3.3	2015-06-10
10	4WSM\|1\|2L	Transfer RNA	tRNA-Leu, mRNA	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-ray diffraction	3.3	2015-06-10
11	4V8B\|1\|CB	Transfer RNA	TRNA-LEU, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
12	4V87\|1\|BB	Transfer RNA	TRNA-LEU, MRNA	synthetic construct	Synthetic	RF00005	Crystal structure analysis of ribosomal decoding.	X-ray diffraction	3.1	2014-07-09
13	4WSM\|1\|3L	Transfer RNA	tRNA-Leu	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-ray diffraction	3.3	2015-06-10
14	4WSM\|1\|1L	Transfer RNA	tRNA-Leu, mRNA	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-ray diffraction	3.3	2015-06-10
15	4WSM\|1\|1K	Transfer RNA	tRNA-Leu, mRNA	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-ray diffraction	3.3	2015-06-10
16	4V87\|1\|CB	Transfer RNA	TRNA-LEU, MRNA	synthetic construct	Synthetic	RF00005	Crystal structure analysis of ribosomal decoding.	X-ray diffraction	3.1	2014-07-09
17	4WSM\|1\|3K	Transfer RNA	tRNA-Leu	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-ray diffraction	3.3	2015-06-10

Release history

Release	2.27	2.28	2.29	2.30	2.31	2.32	2.33	2.34	2.35	2.36	2.37	2.38	2.39	2.40	2.41	2.42	2.43	2.44	2.45	2.46	2.47	2.48	2.49	2.50	2.51	2.52	2.53	2.54	2.55	2.56	2.57	2.58	2.59	2.60	2.61	2.62	2.63	2.64	2.65	2.66	2.67	2.68	2.69	2.70	2.71	2.72	2.73	2.74	2.75	2.76	2.77	2.78	2.79	2.80	2.81	2.82	2.83	2.84	2.85	2.86	2.87	2.88	2.89	2.90	2.91	2.92
Date	2015-06-12	2015-06-19	2015-06-26	2015-07-03	2015-07-10	2015-07-17	2015-07-24	2015-07-31	2015-08-07	2015-08-14	2015-08-21	2015-08-28	2015-09-04	2015-09-11	2015-09-18	2015-09-25	2015-10-02	2015-10-09	2015-10-16	2015-10-23	2015-10-30	2015-11-06	2015-11-13	2015-11-20	2015-11-27	2015-12-04	2015-12-11	2015-12-18	2015-12-25	2016-01-01	2016-01-08	2016-01-15	2016-01-22	2016-01-29	2016-02-05	2016-02-12	2016-02-19	2016-02-26	2016-03-04	2016-03-11	2016-03-18	2016-03-25	2016-04-01	2016-04-08	2016-04-15	2016-04-22	2016-04-29	2016-05-06	2016-05-13	2016-05-20	2016-05-27	2016-06-03	2016-06-10	2016-06-17	2016-06-24	2016-07-01	2016-07-08	2016-07-15	2016-07-22	2016-07-29	2016-08-05	2016-08-12	2016-08-19	2016-08-26	2016-09-02	2016-09-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_62979.1	NR_all_31492.1	2.27	(11) 2NR0\|1\|G, 4V8B\|1\|AB, 2NR0\|1\|F, 4V87\|1\|CB, 2NR0\|1\|E, 4V87\|1\|BB, 4V8C\|1\|DB, 2NRE\|1\|F, 4V8C\|1\|CB, 2NR0\|1\|H, 4V8B\|1\|CB	(6) 4WSM\|1\|2K, 4WSM\|1\|3K, 4WSM\|1\|1L, 4WSM\|1\|2L, 4WSM\|1\|1K, 4WSM\|1\|3L	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_62979.1	NR_4.0_14663.1	2.93	(5) 2NRE\|1\|F, 2NR0\|1\|E, 2NR0\|1\|F, 2NR0\|1\|G, 2NR0\|1\|H	(12) 4WSM\|1\|1L, 4WSM\|1\|3L, 4V8B\|1\|CB, 4WSM\|1\|3K, 4V8B\|1\|AB, 4WSM\|1\|1K, 4WSM\|1\|2L, 4V87\|1\|CB, 4V8C\|1\|DB, 4WSM\|1\|2K, 4V87\|1\|BB, 4V8C\|1\|CB	(0)
NR_4.0_62979.1	NR_4.0_40540.1	2.93	(10) 4WSM\|1\|2L, 4V87\|1\|BB, 4V87\|1\|CB, 4V8B\|1\|AB, 4V8B\|1\|CB, 4V8C\|1\|CB, 4V8C\|1\|DB, 4WSM\|1\|1K, 4WSM\|1\|1L, 4WSM\|1\|2K	(7) 2NR0\|1\|E, 2NRE\|1\|F, 2NR0\|1\|H, 2NR0\|1\|F, 4WSM\|1\|3K, 2NR0\|1\|G, 4WSM\|1\|3L	(1) 5KCR\|1\|1x
NR_4.0_62979.1	NR_4.0_55925.1	2.93	(2) 4WSM\|1\|3K, 4WSM\|1\|3L	(15) 2NR0\|1\|F, 4V87\|1\|BB, 4V8C\|1\|CB, 4WSM\|1\|2K, 2NR0\|1\|G, 4V87\|1\|CB, 4V8C\|1\|DB, 4WSM\|1\|2L, 2NR0\|1\|E, 2NRE\|1\|F, 4V8B\|1\|CB, 4WSM\|1\|1L, 2NR0\|1\|H, 4V8B\|1\|AB, 4WSM\|1\|1K	(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	2NR0\|1\|G	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA	X-RAY DIFFRACTION	3.9	67
2	2NR0\|1\|F	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA	X-RAY DIFFRACTION	3.9	74
3	2NR0\|1\|H	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA	X-RAY DIFFRACTION	3.9	65
4	2NR0\|1\|E	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA	X-RAY DIFFRACTION	3.9	81
5	2NRE\|1\|F	Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA	X-RAY DIFFRACTION	4	56
6	4WSM\|1\|2K	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-RAY DIFFRACTION	3.3	73
7	4WSM\|1\|1K	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-RAY DIFFRACTION	3.3	83
8	4V8B\|1\|AB	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	87
9	4V87\|1\|BB	Crystal structure analysis of ribosomal decoding.	X-RAY DIFFRACTION	3.1	87
10	4V8C\|1\|CB	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	87
11	4V8B\|1\|CB	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	87
12	4V87\|1\|CB	Crystal structure analysis of ribosomal decoding.	X-RAY DIFFRACTION	3.1	87
13	4V8C\|1\|DB	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	87
14	4WSM\|1\|1L	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-RAY DIFFRACTION	3.3	83
15	4WSM\|1\|2L	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-RAY DIFFRACTION	3.3	74
16	4WSM\|1\|3L	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-RAY DIFFRACTION	3.3	75
17	4WSM\|1\|3K	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-RAY DIFFRACTION	3.3	77

Equivalence class NR_4.0_62979.1 Obsolete

Release history

Parents

Children