BGSU RNA Site //

Equivalence class NR_4.0_65061.6 Obsolete

#IFECompound(s)RNA source organismTitleMethodResolutionDate
16ZM7|1|L5+ 6ZM7|1|L8 (rep)28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.72020-07-29
26Y6X|1|L5+ 6Y6X|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensTetracenomycin X bound to the human ribosomeELECTRON MICROSCOPY2.82020-07-08
36Z6N|1|L5+ 6Z6N|1|L828S rRNA, 5.8S rRNAHomo sapiensCryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.92020-07-29
46QZP|1|L5+ 6QZP|1|L828S rRNA (3773-MER), 5.8S rRNA (156-MER)Homo sapiensHigh-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.92019-04-24
56ZME|1|L5+ 6ZME|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensSARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY32020-08-12
66Z6L|1|L5+ 6Z6L|1|L828S rRNA, 5.8S rRNAHomo sapiensCryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY32020-07-29
76EK0|1|L5+ 6EK0|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHigh-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.92018-01-24
86Z6M|1|L5+ 6Z6M|1|L828S rRNA, 5.8S rRNAHomo sapiensCryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1ELECTRON MICROSCOPY3.12020-07-29
96OLE|1|t+ 6OLE|1|D28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.12019-06-19
106OM0|1|t+ 6OM0|1|D28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.12019-06-19
116Y2L|1|L5+ 6Y2L|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensStructure of human ribosome in POST stateELECTRON MICROSCOPY32020-04-15
126Y0G|1|L5+ 6Y0G|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensStructure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.22020-04-15
136OLI|1|t+ 6OLI|1|D28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensStructure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.52019-06-19
146OLG|1|A2+ 6OLG|1|A328S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.42019-06-19
156Y57|1|L5+ 6Y57|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensStructure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.52020-04-15
165T2C|1|A+ 5T2C|1|C28S rRNA, 5.8S rRNAHomo sapiensCryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.62017-01-25
176OM7|1|t+ 6OM7|1|D28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsELECTRON MICROSCOPY3.72019-06-19
184UG0|1|L5+ 4UG0|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensSTRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.62015-06-10
196OLF|1|t+ 6OLF|1|D28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsELECTRON MICROSCOPY3.92019-06-19
206IP5|1|1A+ 6IP5|1|1C28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensCryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)ELECTRON MICROSCOPY3.92019-05-29
216IP8|1|1A+ 6IP8|1|1C28S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensCryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)ELECTRON MICROSCOPY3.92019-05-29
226OLZ|1|A2+ 6OLZ|1|A328S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAELECTRON MICROSCOPY3.92019-06-19
235AJ0|1|A2+ 5AJ0|1|A328S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensCryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.52015-05-20
245LKS|1|L5+ 5LKS|1|L828S ribosomal RNA, 5.8S ribosomal RNAHomo sapiensStructure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.62017-04-26
256SXO|1|L528S ribosomal RNA including ES27L-B (2839-3265)Homo sapiensCryo-EM structure of the human Ebp1-ribosome complexELECTRON MICROSCOPY3.32020-02-19
265A8L|1|A28S RIBOSOMAL RNAHomo sapiensHuman eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.82015-12-02

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15A8L|1|AHuman eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.8253
26ZME|1|L5+6ZME|1|L8SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY33773
36Z6M|1|L5+6Z6M|1|L8Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1ELECTRON MICROSCOPY3.13772
46ZM7|1|L5+6ZM7|1|L8SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.73773
56Z6L|1|L5+6Z6L|1|L8Cryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY33772
66Z6N|1|L5+6Z6N|1|L8Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.93772
76Y6X|1|L5+6Y6X|1|L8Tetracenomycin X bound to the human ribosomeELECTRON MICROSCOPY2.83773
86EK0|1|L5+6EK0|1|L8High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.93672
96QZP|1|L5+6QZP|1|L8High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.93696
106Y2L|1|L5+6Y2L|1|L8Structure of human ribosome in POST stateELECTRON MICROSCOPY33613
116Y0G|1|L5+6Y0G|1|L8Structure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.23644
126Y57|1|L5+6Y57|1|L8Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.53574
136IP8|1|1A+6IP8|1|1CCryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)ELECTRON MICROSCOPY3.93667
146IP5|1|1A+6IP5|1|1CCryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)ELECTRON MICROSCOPY3.93717
156OM7|1|t+6OM7|1|DHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsELECTRON MICROSCOPY3.73607
166OLF|1|t+6OLF|1|DHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsELECTRON MICROSCOPY3.93607
176OLI|1|t+6OLI|1|DStructure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.53607
186OLE|1|t+6OLE|1|DHuman ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.13607
196OM0|1|t+6OM0|1|DHuman ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.13607
206OLZ|1|A2+6OLZ|1|A3Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAELECTRON MICROSCOPY3.93643
216OLG|1|A2+6OLG|1|A3Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.43612
225AJ0|1|A2+5AJ0|1|A3Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.53612
235T2C|1|A+5T2C|1|CCryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.63776
244UG0|1|L5+4UG0|1|L8STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.63776
255LKS|1|L5+5LKS|1|L8Structure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.63776
266SXO|1|L5Cryo-EM structure of the human Ebp1-ribosome complexELECTRON MICROSCOPY3.3268