Equivalence class NR_4.0_67384.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7RYG|1|B (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00001 | A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S | Electron microscopy | 2.38 | 2022-02-02 |
| 2 | 7RYH|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00001 | A. baumannii Ribosome-TP-6076 complex: Empty 70S | Electron microscopy | 2.43 | 2022-02-02 |
| 3 | 6YSI|1|5 | 5S ribosomal RNA | 5S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00001 | Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit | Electron microscopy | 2.5 | 2020-09-16 |
| 4 | 7M4Y|1|B | 5S ribosomal RNA | 5s ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00001 | A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA | Electron microscopy | 2.5 | 2021-05-19 |
| 5 | 7M4W|1|B | 5S ribosomal RNA | 5s ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00001 | A. baumannii Ribosome-Eravacycline complex: 70S Empty | Electron microscopy | 2.55 | 2021-05-19 |
| 6 | 7RYF|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00001 | A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S | Electron microscopy | 2.65 | 2022-02-02 |
| 7 | 7M4X|1|B | 5S ribosomal RNA | 5s ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00001 | A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA | Electron microscopy | 2.66 | 2021-05-19 |
| 8 | 6YHS|1|5 | 5S ribosomal RNA | 5S ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00001 | Acinetobacter baumannii ribosome-amikacin complex - 50S subunit | Electron microscopy | 2.7 | 2020-09-16 |
| 9 | 7M4V|1|B | 5S ribosomal RNA | 5s ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00001 | A. baumannii Ribosome-Eravacycline complex: 50S | Electron microscopy | 2.54 | 2021-05-19 |
| 10 | 7M4Z|1|B | 5S ribosomal RNA | 5s ribosomal RNA | Acinetobacter baumannii AB0057 | Bacteria | RF00001 | A. baumannii Ribosome-Eravacycline complex: 70S with hpf | Electron microscopy | 2.92 | 2021-05-19 |
| 11 | 6V3A|1|B | 5S ribosomal RNA | 5s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00001 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | Electron microscopy | 2.82 | 2020-02-05 |
| 12 | 6V3B|1|B | 5S ribosomal RNA | 5s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00001 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | Electron microscopy | 2.91 | 2020-02-05 |
| 13 | 6V3D|1|B | 5S ribosomal RNA | 5s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00001 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit | Electron microscopy | 2.95 | 2020-02-05 |
| 14 | 6V39|1|B | 5S ribosomal RNA | 5s ribosomal RNA | Acinetobacter baumannii | Bacteria | RF00001 | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | Electron microscopy | 3.04 | 2020-02-05 |
Release history
| Release | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_67384.2 | NR_4.0_67384.3 | 3.279 | (14) 6YSI|1|5, 7M4W|1|B, 7M4Z|1|B, 7RYH|1|B, 6V3B|1|B, 7RYG|1|B, 6YHS|1|5, 7M4Y|1|B, 6V3A|1|B, 7M4V|1|B, 7RYF|1|B, 6V3D|1|B, 7M4X|1|B, 6V39|1|B | (0) | (6) 7UVV|1|B, 7UVZ|1|B, 7UVX|1|B, 7UVY|1|B, 7UVW|1|B, 7UW1|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6V39|1|B | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA | ELECTRON MICROSCOPY | 3.04 | 115 |
| 2 | 6V3A|1|B | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA | ELECTRON MICROSCOPY | 2.82 | 115 |
| 3 | 6V3B|1|B | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state | ELECTRON MICROSCOPY | 2.91 | 115 |
| 4 | 6V3D|1|B | Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit | ELECTRON MICROSCOPY | 2.95 | 115 |
| 5 | 7M4V|1|B | A. baumannii Ribosome-Eravacycline complex: 50S | ELECTRON MICROSCOPY | 2.54 | 115 |
| 6 | 7M4X|1|B | A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA | ELECTRON MICROSCOPY | 2.66 | 115 |
| 7 | 7M4Y|1|B | A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNA | ELECTRON MICROSCOPY | 2.5 | 115 |
| 8 | 7M4W|1|B | A. baumannii Ribosome-Eravacycline complex: 70S Empty | ELECTRON MICROSCOPY | 2.55 | 115 |
| 9 | 7M4Z|1|B | A. baumannii Ribosome-Eravacycline complex: 70S with hpf | ELECTRON MICROSCOPY | 2.92 | 115 |
| 10 | 7RYF|1|B | A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S | ELECTRON MICROSCOPY | 2.65 | 115 |
| 11 | 7RYH|1|B | A. baumannii Ribosome-TP-6076 complex: Empty 70S | ELECTRON MICROSCOPY | 2.43 | 115 |
| 12 | 7RYG|1|B | A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S | ELECTRON MICROSCOPY | 2.38 | 115 |
| 13 | 6YHS|1|5 | Acinetobacter baumannii ribosome-amikacin complex - 50S subunit | ELECTRON MICROSCOPY | 2.7 | 115 |
| 14 | 6YSI|1|5 | Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit | ELECTRON MICROSCOPY | 2.5 | 115 |