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Equivalence class NR_4.0_68467.5 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15LZS|1|2 (rep)Transfer RNAtRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
25LZS|1|iiTransfer RNAtRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
35LZV|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
45LZZ|1|2Transfer RNAP-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
55LZW|1|2Transfer RNAP-site tRNA, mRNA (truncated)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.532016-11-30
66MTB|1|2Transfer RNAP-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)Electron microscopy3.62018-11-21
75LZX|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.672016-11-30
85LZT|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.652016-11-30
96FRK|1|2Transfer RNAtRNAOryctolagus cuniculusEukaryaRF00005Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexElectron microscopy3.72018-03-28
103JAH|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
116HCF|1|23Transfer RNAP-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonElectron microscopy3.92018-10-17
123JAG|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.652015-08-12
133JAI|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.652015-08-12
145LZU|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.752016-11-30
153JAJ|1|3Transfer RNAVal tRNAOryctolagus cuniculusEukaryaRF00005Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
163JAN|1|3Transfer RNAVal tRNAOryctolagus cuniculusEukaryaRF00005Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05

Release history

Release3.493.50
Date2018-11-232018-11-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_68467.5NR_4.0_68467.43.49(15) 6HCF|1|23, 6FRK|1|2, 5LZZ|1|2, 5LZX|1|2, 5LZW|1|2, 5LZV|1|2, 5LZU|1|2, 5LZT|1|2, 5LZS|1|ii, 5LZS|1|2, 3JAN|1|3, 3JAJ|1|3, 3JAI|1|2, 3JAH|1|2, 3JAG|1|2(1) 6MTB|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_68467.5NR_4.0_68467.63.51(16) 5LZW|1|2, 6MTB|1|2, 3JAN|1|3, 5LZV|1|2, 6HCF|1|23, 3JAJ|1|3, 5LZU|1|2, 6FRK|1|2, 3JAI|1|2, 5LZT|1|2, 5LZZ|1|2, 3JAH|1|2, 5LZS|1|ii, 5LZX|1|2, 3JAG|1|2, 5LZS|1|2(0) (3) 6GZ3|1|Bv, 6GZ4|1|Bv, 6GZ5|1|Bv

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13JAJ|1|3Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.7576
23JAN|1|3Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.7576
36FRK|1|2Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.776
46HCF|1|23Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.976
53JAI|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.6576
63JAG|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.6576
73JAH|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.4576
85LZV|1|2Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.3576
95LZT|1|2Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.6576
105LZW|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.5376
115LZX|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.6776
125LZZ|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.4776
136MTB|1|2Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.676
145LZS|1|2Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.3176
155LZU|1|2Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.7576
165LZS|1|iiStructure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.3176
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