Equivalence class NR_4.0_68467.9 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 7NWI|1|2 (rep) | Transfer RNA | P-Site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S | Electron microscopy | 3.13 | 2021-07-07 |
2 | 6T59|1|23 | Transfer RNA | P-site tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex | Electron microscopy | 3.11 | 2019-11-27 |
3 | 5LZS|1|2 | Transfer RNA | tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | Electron microscopy | 3.31 | 2016-11-30 |
4 | 5LZV|1|2 | Transfer RNA | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | Electron microscopy | 3.35 | 2016-11-30 |
5 | 6GZ5|1|Bv | Transfer RNA | P/P-site-tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | Electron microscopy | 3.5 | 2018-12-05 |
6 | 5LZZ|1|2 | Transfer RNA | P-site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | Electron microscopy | 3.47 | 2016-11-30 |
7 | 5LZW|1|2 | Transfer RNA | P-site tRNA, mRNA (truncated) | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | Electron microscopy | 3.53 | 2016-11-30 |
8 | 6GZ4|1|Bv | Transfer RNA | ap/P-site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | Electron microscopy | 3.6 | 2018-12-05 |
9 | 6GZ3|1|Bv | Transfer RNA | ap/P-site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | Electron microscopy | 3.6 | 2018-12-05 |
10 | 6MTB|1|2 | Transfer RNA | P-site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | Electron microscopy | 3.6 | 2018-11-21 |
11 | 5LZX|1|2 | Transfer RNA | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | Electron microscopy | 3.67 | 2016-11-30 |
12 | 5LZT|1|2 | Transfer RNA | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | Electron microscopy | 3.65 | 2016-11-30 |
13 | 6FRK|1|2 | Transfer RNA | tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | Electron microscopy | 3.7 | 2018-03-28 |
14 | 3JAH|1|2 | Transfer RNA | tRNA(Val), mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | Electron microscopy | 3.45 | 2015-08-12 |
15 | 6HCF|1|23 | Transfer RNA | P-site tRNA, mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | Electron microscopy | 3.9 | 2018-10-17 |
16 | 3JAG|1|2 | Transfer RNA | tRNA(Val), mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
17 | 3JAI|1|2 | Transfer RNA | tRNA(Val), mRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
18 | 5LZU|1|2 | Transfer RNA | P-site tRNA, mRNA (UGA stop codon) | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | Electron microscopy | 3.75 | 2016-11-30 |
19 | 3JAJ|1|3 | Transfer RNA | Val tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the engaged state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
20 | 3JAN|1|3 | Transfer RNA | Val tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the scanning state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
Release history
Release | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 |
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Date | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_4.0_68467.9 | NR_4.0_68467.8 | 3.186 | (19) 6T59|1|23, 6MTB|1|2, 6HCF|1|23, 6GZ5|1|Bv, 6GZ4|1|Bv, 6GZ3|1|Bv, 6FRK|1|2, 5LZZ|1|2, 5LZX|1|2, 5LZW|1|2, 5LZV|1|2, 5LZU|1|2, 5LZT|1|2, 5LZS|1|2, 3JAN|1|3, 3JAJ|1|3, 3JAI|1|2, 3JAH|1|2, 3JAG|1|2 | (1) 7NWI|1|2 | (0) |
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_4.0_68467.9 | NR_4.0_68467.10 | 3.253 | (20) 5LZS|1|2, 6GZ3|1|Bv, 3JAN|1|3, 6FRK|1|2, 3JAJ|1|3, 5LZZ|1|2, 7NWI|1|2, 3JAI|1|2, 5LZX|1|2, 6T59|1|23, 3JAH|1|2, 5LZW|1|2, 6MTB|1|2, 3JAG|1|2, 5LZV|1|2, 6HCF|1|23, 5LZU|1|2, 6GZ5|1|Bv, 5LZT|1|2, 6GZ4|1|Bv | (0) | (2) 7TM3|1|q, 7TUT|1|q |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 7NWI|1|2 | Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S | ELECTRON MICROSCOPY | 3.13 | 76 |
2 | 5LZU|1|2 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 76 |
3 | 5LZS|1|2 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 76 |
4 | 6MTB|1|2 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | ELECTRON MICROSCOPY | 3.6 | 76 |
5 | 6T59|1|23 | Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex | ELECTRON MICROSCOPY | 3.11 | 76 |
6 | 5LZZ|1|2 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 76 |
7 | 5LZX|1|2 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 76 |
8 | 5LZW|1|2 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 76 |
9 | 5LZT|1|2 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 76 |
10 | 5LZV|1|2 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 76 |
11 | 3JAH|1|2 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 76 |
12 | 3JAG|1|2 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 76 |
13 | 3JAI|1|2 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 76 |
14 | 6HCF|1|23 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 76 |
15 | 3JAN|1|3 | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 76 |
16 | 3JAJ|1|3 | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 76 |
17 | 6FRK|1|2 | Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex | ELECTRON MICROSCOPY | 3.7 | 76 |
18 | 6GZ5|1|Bv | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | ELECTRON MICROSCOPY | 3.5 | 76 |
19 | 6GZ3|1|Bv | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | ELECTRON MICROSCOPY | 3.6 | 76 |
20 | 6GZ4|1|Bv | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | ELECTRON MICROSCOPY | 3.6 | 76 |