BGSU RNA Site //

Equivalence class NR_4.0_69813.5 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
15IBB|1|1K (rep)Transfer RNAtRNAVal, mRNAEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.962016-05-25
26CAE|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.62018-04-18
36BY1|1|AWTransfer RNAValine-specific transfer RNA, Messenger RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-RAY DIFFRACTION3.942019-02-27
46ND6|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.852019-02-20
56BY1|1|BWTransfer RNAValine-specific transfer RNA, Messenger RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-RAY DIFFRACTION3.942019-02-27
65IBB|1|3LTransfer RNAtRNAValEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.962016-05-25
76CAE|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.62018-04-18
86BY1|1|BVTransfer RNAValine-specific transfer RNA, Messenger RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-RAY DIFFRACTION3.942019-02-27
96BY1|1|AVTransfer RNAValine-specific transfer RNA, Messenger RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-RAY DIFFRACTION3.942019-02-27
106CAE|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.62018-04-18
116ND6|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.852019-02-20
126CAE|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.62018-04-18
135IBB|1|3KTransfer RNAtRNAValEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.962016-05-25
146ND6|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.852019-02-20
156ND6|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.852019-02-20
166BY1|1|AYTransfer RNAValine-specific transfer RNA, Messenger RNAEscherichia coliBacteriaRF00005E. coli pH03H9 complexX-RAY DIFFRACTION3.942019-02-27

Release history

Release3.633.643.653.663.67
Date2019-03-012019-03-082019-03-152019-03-222019-03-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_69813.5NR_4.0_69813.43.63(11) 6CAE|1|2y, 5IBB|1|1K, 6CAE|1|2w, 6CAE|1|1y, 6ND6|1|2y, 6CAE|1|1w, 6ND6|1|2w, 5IBB|1|3L, 6ND6|1|1y, 5IBB|1|3K, 6ND6|1|1w(5) 6BY1|1|AY, 6BY1|1|AV, 6BY1|1|AW, 6BY1|1|BW, 6BY1|1|BV(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_69813.5NR_4.0_69813.63.68(16) 6BY1|1|BW, 6ND6|1|2y, 6BY1|1|BV, 6ND6|1|2w, 6BY1|1|AY, 6ND6|1|1y, 6BY1|1|AW, 6ND6|1|1w, 6BY1|1|AV, 6CAE|1|2y, 5IBB|1|3L, 6CAE|1|2w, 5IBB|1|3K, 6CAE|1|1y, 5IBB|1|1K, 6CAE|1|1w(0) (2) 6N1D|1|APTN, 6N1D|1|BPTN

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15IBB|1|3KStructure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9670
25IBB|1|3LStructure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9671
36CAE|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.668
46ND6|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8568
56ND6|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8567
66CAE|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.667
76BY1|1|AYE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
86ND6|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8567
96CAE|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.667
106CAE|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.667
116ND6|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolutionX-RAY DIFFRACTION2.8567
126BY1|1|AVE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
136BY1|1|BVE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
146BY1|1|BWE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
156BY1|1|AWE. coli pH03H9 complexX-RAY DIFFRACTION3.9476
165IBB|1|1KStructure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9667