Equivalence class NR_4.0_69813.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5IBB|1|1K (rep) | Transfer RNA | tRNAVal, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
| 2 | 6CAE|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-04-18 |
| 3 | 6BY1|1|AW | Transfer RNA | Valine-specific transfer RNA, Messenger RNA | Escherichia coli | Bacteria | RF00005 | E. coli pH03H9 complex | X-ray diffraction | 3.94 | 2019-02-27 |
| 4 | 6ND6|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-ray diffraction | 2.85 | 2019-02-20 |
| 5 | 6BY1|1|BW | Transfer RNA | Valine-specific transfer RNA, Messenger RNA | Escherichia coli | Bacteria | RF00005 | E. coli pH03H9 complex | X-ray diffraction | 3.94 | 2019-02-27 |
| 6 | 5IBB|1|3L | Transfer RNA | tRNAVal | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
| 7 | 6CAE|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-04-18 |
| 8 | 6BY1|1|BV | Transfer RNA | Valine-specific transfer RNA, Messenger RNA | Escherichia coli | Bacteria | RF00005 | E. coli pH03H9 complex | X-ray diffraction | 3.94 | 2019-02-27 |
| 9 | 6BY1|1|AV | Transfer RNA | Valine-specific transfer RNA, Messenger RNA | Escherichia coli | Bacteria | RF00005 | E. coli pH03H9 complex | X-ray diffraction | 3.94 | 2019-02-27 |
| 10 | 6CAE|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-04-18 |
| 11 | 6ND6|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-ray diffraction | 2.85 | 2019-02-20 |
| 12 | 6CAE|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-04-18 |
| 13 | 5IBB|1|3K | Transfer RNA | tRNAVal | Escherichia coli | Bacteria | RF00005 | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-ray diffraction | 2.96 | 2016-05-25 |
| 14 | 6ND6|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-ray diffraction | 2.85 | 2019-02-20 |
| 15 | 6ND6|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-ray diffraction | 2.85 | 2019-02-20 |
| 16 | 6N1D|1|BPTN | Transfer RNA | P-tRNA | Escherichia coli | Bacteria | RF00005 | X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State | X-ray diffraction | 3.2 | 2019-04-03 |
| 17 | 6N1D|1|APTN | Transfer RNA | P-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State | X-ray diffraction | 3.2 | 2019-04-03 |
| 18 | 6BY1|1|AY | Transfer RNA | Valine-specific transfer RNA, Messenger RNA | Escherichia coli | Bacteria | RF00005 | E. coli pH03H9 complex | X-ray diffraction | 3.94 | 2019-02-27 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_69813.6 | NR_4.0_69813.5 | 3.68 | (16) 6CAE|1|2w, 6CAE|1|1y, 6CAE|1|1w, 6BY1|1|BW, 6BY1|1|BV, 6BY1|1|AY, 6BY1|1|AW, 6BY1|1|AV, 5IBB|1|3L, 5IBB|1|3K, 5IBB|1|1K, 6ND6|1|2y, 6ND6|1|2w, 6ND6|1|1y, 6ND6|1|1w, 6CAE|1|2y | (2) 6N1D|1|APTN, 6N1D|1|BPTN | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_69813.6 | NR_4.0_69813.7 | 3.70 | (18) 6ND6|1|1y, 6BY1|1|AY, 6ND6|1|2y, 6BY1|1|BW, 6CAE|1|1y, 6CAE|1|2y, 5IBB|1|3K, 6N1D|1|BPTN, 6BY1|1|AV, 6BY1|1|AW, 6ND6|1|2w, 6BY1|1|BV, 6CAE|1|1w, 6CAE|1|2w, 5IBB|1|1K, 6N1D|1|APTN, 5IBB|1|3L, 6ND6|1|1w | (0) | (8) 6OF1|1|2w, 6OF1|1|1y, 6OF1|1|1w, 6O97|1|2y, 6O97|1|2w, 6O97|1|1y, 6O97|1|1w, 6OF1|1|2y |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5IBB|1|1K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 67 |
| 2 | 6BY1|1|AW | E. coli pH03H9 complex | X-RAY DIFFRACTION | 3.94 | 76 |
| 3 | 6BY1|1|BW | E. coli pH03H9 complex | X-RAY DIFFRACTION | 3.94 | 76 |
| 4 | 6BY1|1|BV | E. coli pH03H9 complex | X-RAY DIFFRACTION | 3.94 | 76 |
| 5 | 6BY1|1|AV | E. coli pH03H9 complex | X-RAY DIFFRACTION | 3.94 | 76 |
| 6 | 6ND6|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 67 |
| 7 | 6CAE|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 67 |
| 8 | 6CAE|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 67 |
| 9 | 6ND6|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 67 |
| 10 | 6BY1|1|AY | E. coli pH03H9 complex | X-RAY DIFFRACTION | 3.94 | 76 |
| 11 | 6CAE|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 67 |
| 12 | 6ND6|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 67 |
| 13 | 6ND6|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution | X-RAY DIFFRACTION | 2.85 | 68 |
| 14 | 6CAE|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 68 |
| 15 | 5IBB|1|3K | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 70 |
| 16 | 5IBB|1|3L | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site | X-RAY DIFFRACTION | 2.96 | 71 |
| 17 | 6N1D|1|APTN | X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State | X-RAY DIFFRACTION | 3.2 | 70 |
| 18 | 6N1D|1|BPTN | X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State | X-RAY DIFFRACTION | 3.2 | 70 |