#PDBTitleRNA source organismCompoundsMethodResolutionDate
14PRF|1|B (rep)A Second Look at the HDV Ribozyme Structure and Dynamics.U1 small nuclear ribonucleoprotein A, Hepatitis Delta virus ribozymeX-RAY DIFFRACTION2.392014-10-29
21VBY|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ boundU1 small nuclear ribonucleoprotein A, Hepatitis Delta virus ribozymeX-RAY DIFFRACTION2.92004-05-18
31VC5|1|BCrystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solutionU1 small nuclear ribonucleoprotein A, Hepatitis Delta virus ribozymeX-RAY DIFFRACTION3.42004-05-18
42OIH|1|BHepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+U1 small nuclear ribonucleoprotein A, HDV ribozymeX-RAY DIFFRACTION2.42007-03-27
51VC0|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Imidazole and Sr2+ solutionU1 small nuclear ribonucleoprotein A, Hepatitis Delta virus ribozymeX-RAY DIFFRACTION2.52004-05-18
61VBZ|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solutionU1 small nuclear ribonucleoprotein A, Hepatitis Delta virus ribozymeX-RAY DIFFRACTION2.82004-05-18
71VBX|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solutionU1 small nuclear ribonucleoprotein A, Hepatitis Delta virus ribozymeX-RAY DIFFRACTION2.72004-05-18
81SJ4|1|RCrystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solutionHepatitis delta virussmall nuclear ribonucleoprotein A, precursor form of the Hepatitis Delta virus ribozymeX-RAY DIFFRACTION2.72004-05-18
91SJ3|1|RHepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ BoundHepatitis delta virussmall nuclear ribonucleoprotein A, precursor form of the Hepatitis Delta virus ribozymeX-RAY DIFFRACTION2.22004-05-18
101SJF|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solutionU1 small nuclear ribonucleoprotein A, Hepatitis Delta virus ribozymeX-RAY DIFFRACTION2.752004-05-18
111DRZ|1|BU1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEXHepatitis delta virusPROTEIN (U1 SMALL RIBONUCLEOPROTEIN A), RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME)X-RAY DIFFRACTION2.31999-02-16
121VC6|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutionsU1 small nuclear ribonucleoprotein A, Hepatitis Delta virus ribozymeX-RAY DIFFRACTION2.82004-05-18
132OJ3|1|BHepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+)U1 small nuclear ribonucleoprotein A, HDV RIBOZYMEX-RAY DIFFRACTION2.92007-03-27

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.158
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_73165.1NR_4.0_73165.23.0(13) 1VC0|1|B, 1VBZ|1|B, 1VBY|1|B, 1VBX|1|B, 4PRF|1|B, 1SJF|1|B, 2OJ3|1|B, 1SJ4|1|R, 2OIH|1|B, 1SJ3|1|R, 1VC6|1|B, 1DRZ|1|B, 1VC5|1|B(0) (2) 1VC7|1|B, 1CX0|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14PRF|1|BA Second Look at the HDV Ribozyme Structure and Dynamics.X-RAY DIFFRACTION2.3975
21VBY|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ boundX-RAY DIFFRACTION2.973
31VC5|1|BCrystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solutionX-RAY DIFFRACTION3.470
42OIH|1|BHepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+X-RAY DIFFRACTION2.473
51VC0|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Imidazole and Sr2+ solutionX-RAY DIFFRACTION2.573
61VBZ|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solutionX-RAY DIFFRACTION2.873
71VBX|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solutionX-RAY DIFFRACTION2.773
81SJ4|1|RCrystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solutionX-RAY DIFFRACTION2.773
91SJ3|1|RHepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ BoundX-RAY DIFFRACTION2.273
101SJF|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solutionX-RAY DIFFRACTION2.7574
111DRZ|1|BU1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEXX-RAY DIFFRACTION2.372
121VC6|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutionsX-RAY DIFFRACTION2.872
132OJ3|1|BHepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+)X-RAY DIFFRACTION2.973