RNA 3D Hub //

Equivalence class NR_4.0_73286.17 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16QW6|1|5 (rep)U5 spliceosomal RNAU5 snRNAHomo sapiensEukaryaRF00020Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution.Electron microscopy2.922019-04-17
27DVQ|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex)Electron microscopy2.892021-03-31
37QTT|1|eU5 spliceosomal RNAU5 snRNA, MINXHomo sapiensEukaryaRF00020Structural organization of a late activated human spliceosome (Baqr, core region)Electron microscopy3.12023-05-10
46QX9|1|5U5 spliceosomal RNAU5 snRNAHomo sapiensEukaryaRF00020Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).Electron microscopy3.282019-04-17
56QDV|1|5U5 spliceosomal RNAU5 snRNA, Ligated exons: MINX mRNAHomo sapiensEukaryaRF00020Human post-catalytic P complex spliceosomeElectron microscopy3.32019-02-20
66ZYM|1|5U5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Human C Complex Spliceosome - High-resolution COREElectron microscopy3.42020-10-14
76ICZ|1|BU5 spliceosomal RNAU5snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstromElectron microscopy32019-03-13
87W59|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020The cryo-EM structure of human pre-C*-I complexElectron microscopy3.62022-06-22
97W5A|1|BU5 spliceosomal RNAU5 snRNA, Pre-mRNAHomo sapiensEukaryaRF00020The cryo-EM structure of human pre-C*-II complexElectron microscopy3.62022-06-22
106FF4|1|5U5 spliceosomal RNAU5 snRNA, U2 snRNA, pre mRNAHomo sapiensEukaryaRF00020human Bact spliceosome core structureElectron microscopy3.42018-08-29
116ID0|1|BU5 spliceosomal RNAU5snRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolutionElectron microscopy2.92019-03-13
125XJC|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstromElectron microscopy3.62017-07-05
136ID1|1|BU5 spliceosomal RNAU5snRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolutionElectron microscopy2.862019-03-13
146AHD|1|BU5 spliceosomal RNAU5snRNA, pre-mRNAHomo sapiensEukaryaRF00020The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolutionElectron microscopy3.82018-11-14
157ABF|1|5U5 spliceosomal RNAU5 small nuclear RNA, MINX M3 RNAHomo sapiensEukaryaRF00020Human pre-Bact-1 spliceosome core structureElectron microscopy3.92020-12-09

Release history

Release3.2823.2833.2843.2853.2863.2873.2883.2893.290
Date2023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_73286.17NR_4.0_73286.163.282(14) 7W5A|1|B, 7W59|1|B, 7DVQ|1|B, 7ABF|1|5, 6ZYM|1|5, 6QX9|1|5, 6QW6|1|5, 6QDV|1|5, 6ID1|1|B, 6ID0|1|B, 6ICZ|1|B, 6FF4|1|5, 6AHD|1|B, 5XJC|1|B(1) 7QTT|1|e(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_73286.17NR_4.0_73286.183.291(15) 7W5A|1|B, 7W59|1|B, 7QTT|1|e, 7DVQ|1|B, 7ABF|1|5, 6ZYM|1|5, 6QX9|1|5, 6QW6|1|5, 6QDV|1|5, 6ID1|1|B, 6ID0|1|B, 6ICZ|1|B, 6FF4|1|5, 6AHD|1|B, 5XJC|1|B(0) (1) 8C6J|1|5

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16ICZ|1|BCryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstromELECTRON MICROSCOPY397
26ID0|1|BCryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolutionELECTRON MICROSCOPY2.998
36ID1|1|BCryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolutionELECTRON MICROSCOPY2.8698
47W5A|1|BThe cryo-EM structure of human pre-C*-II complexELECTRON MICROSCOPY3.684
57W59|1|BThe cryo-EM structure of human pre-C*-I complexELECTRON MICROSCOPY3.684
66QDV|1|5Human post-catalytic P complex spliceosomeELECTRON MICROSCOPY3.375
77DVQ|1|BCryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex)ELECTRON MICROSCOPY2.8990
86QX9|1|5Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).ELECTRON MICROSCOPY3.28104
96QW6|1|5Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution.ELECTRON MICROSCOPY2.92104
106AHD|1|BThe Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolutionELECTRON MICROSCOPY3.8115
116ZYM|1|5Human C Complex Spliceosome - High-resolution COREELECTRON MICROSCOPY3.474
126FF4|1|5human Bact spliceosome core structureELECTRON MICROSCOPY3.470
137QTT|1|eStructural organization of a late activated human spliceosome (Baqr, core region)ELECTRON MICROSCOPY3.198
147ABF|1|5Human pre-Bact-1 spliceosome core structureELECTRON MICROSCOPY3.958
155XJC|1|BCryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstromELECTRON MICROSCOPY3.684
Copyright 2024 BGSU RNA group. Page generated in 0.2550 s