Equivalence class NR_4.0_73428.18 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7QI4|1|B (rep) | mitochondrial tRNAVal | Homo sapiens | Human mitochondrial ribosome at 2.2 A resolution | Electron microscopy | 2.21 | 2022-07-13 | |||
| 2 | 6ZM6|1|B | mitochondrial tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | Electron microscopy | 2.59 | 2021-01-13 | |||
| 3 | 7PO4|1|B | tRNAVal | Homo sapiens | Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP) | Electron microscopy | 2.56 | 2022-06-15 | |||
| 4 | 6ZM5|1|B | mitochondrial tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | Electron microscopy | 2.89 | 2021-01-13 | |||
| 5 | 7ODR|1|B | mitochondrial tRNAVal | Homo sapiens | State A of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 2.9 | 2021-06-23 | |||
| 6 | 7OF0|1|B | mitochondrial tRNAVal | Homo sapiens | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1). | Electron microscopy | 2.2 | 2021-06-09 | |||
| 7 | 7ODT|1|B | mitochondrial tRNAVal | Homo sapiens | State C of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 3.1 | 2021-06-23 | |||
| 8 | 7ODS|1|B | mitochondrial tRNAVal | Homo sapiens | State B of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 3.1 | 2021-06-23 | |||
| 9 | 7QI6|1|B | mitochondrial tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution | Electron microscopy | 2.98 | 2023-05-17 | |||
| 10 | 7O9M|1|B | MT-TRNAVAL | Homo sapiens | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module | Electron microscopy | 2.5 | 2021-06-30 | |||
| 11 | 7OF7|1|B | mitochondrial tRNAVal | Homo sapiens | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1). | Electron microscopy | 2.5 | 2021-06-23 | |||
| 12 | 7OF6|1|B | Mitochondrial tRNAVal | Homo sapiens | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2). | Electron microscopy | 2.6 | 2021-06-09 | |||
| 13 | 7OF4|1|B | mitochondrial tRNAVal | Homo sapiens | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1). | Electron microscopy | 2.7 | 2021-06-09 | |||
| 14 | 7OF3|1|B | Mitochondrial tRNAVal | Homo sapiens | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2). | Electron microscopy | 2.7 | 2021-05-19 | |||
| 15 | 7OF2|1|B | mitochondrial tRNAVal | Homo sapiens | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6. | Electron microscopy | 2.7 | 2021-06-02 | |||
| 16 | 7O9K|1|B | MT-TRNAVAL | Homo sapiens | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu | Electron microscopy | 3.1 | 2021-06-30 | |||
| 17 | 7OF5|1|B | Mitochondrial tRNAVal | Homo sapiens | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2). | Electron microscopy | 2.9 | 2021-06-09 | |||
| 18 | 6VMI|1|B | tRNAval | Homo sapiens | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | Electron microscopy | 2.96 | 2020-08-05 | |||
| 19 | 6VLZ|1|B | tRNAval | Homo sapiens | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | Electron microscopy | 2.97 | 2020-08-05 | |||
| 20 | 7QH6|1|B | mitochondrial tRNAVal | Homo sapiens | Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1 | Electron microscopy | 3.08 | 2022-03-02 | |||
| 21 | 7A5J|1|B | mt-tRNAVal | Homo sapiens | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | Electron microscopy | 3.1 | 2020-12-23 | |||
| 22 | 7OIC|1|B | mitochondrial Val tRNA | Homo sapiens | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4 | Electron microscopy | 3.1 | 2021-09-15 | |||
| 23 | 5OOL|1|B | mitochondrial tRNAVal | Homo sapiens | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | Electron microscopy | 3.06 | 2017-09-13 | |||
| 24 | 5OOM|1|B | mitochondrial tRNAVal | Homo sapiens | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | Electron microscopy | 3.03 | 2017-09-13 | |||
| 25 | 7L20|1|B | tRNAval | Homo sapiens | Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt. | Electron microscopy | 3.15 | 2021-05-12 | |||
| 26 | 7OIA|1|B | mitochondrial Val tRNA | Homo sapiens | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C | Electron microscopy | 3.2 | 2021-09-15 | |||
| 27 | 7OIB|1|B | mitochondrial Val tRNA | Homo sapiens | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D | Electron microscopy | 3.3 | 2021-09-15 | |||
| 28 | 7OI9|1|B | mitochondrial Val tRNA | Homo sapiens | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B | Electron microscopy | 3.3 | 2021-09-15 | |||
| 29 | 7A5H|1|B | mt-tRNAVal | Homo sapiens | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | Electron microscopy | 3.3 | 2020-12-23 | |||
| 30 | 6ZSC|1|XB | mt-tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with E-site tRNA | Electron microscopy | 3.5 | 2020-09-16 | |||
| 31 | 7L08|1|B | tRNAVAL | Homo sapiens | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | Electron microscopy | 3.49 | 2021-05-12 | |||
| 32 | 7OI7|1|B | mitochondrial Val tRNA | Homo sapiens | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2 | Electron microscopy | 3.5 | 2021-09-15 | |||
| 33 | 7OIE|1|B | mitochondrial Val tRNA | Homo sapiens | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B | Electron microscopy | 3.5 | 2021-09-15 | |||
| 34 | 7OI8|1|B | mitochondrial Val tRNA | Homo sapiens | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A | Electron microscopy | 3.5 | 2021-09-15 | |||
| 35 | 6ZSD|1|XB | mt-tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | Electron microscopy | 3.7 | 2020-09-16 | |||
| 36 | 6I9R|1|B | tRNA Val | Homo sapiens | Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin | Electron microscopy | 3.9 | 2020-07-08 | |||
| 37 | 7OID|1|B | mitochondrial Val tRNA | Homo sapiens | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A | Electron microscopy | 3.7 | 2021-09-15 | |||
| 38 | 7A5I|1|B3 | mt-tRNAVal | Homo sapiens | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | Electron microscopy | 3.7 | 2020-12-23 | |||
| 39 | 7A5K|1|B3 | mt-tRNAVal | Homo sapiens | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | Electron microscopy | 3.7 | 2020-12-23 | |||
| 40 | 7OG4|1|XB | mitochondrial tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with P/E-tRNA | Electron microscopy | 3.8 | 2021-06-23 | |||
| 41 | 3J7Y|1|B | mt-tRNAVal | Homo sapiens | Structure of the large ribosomal subunit from human mitochondria | Electron microscopy | 3.4 | 2014-10-15 | |||
| 42 | 6ZS9|1|XB | mt-tRNAVal | Homo sapiens | Human mitochondrial ribosome in complex with ribosome recycling factor | Electron microscopy | 4 | 2020-10-14 | |||
| 43 | 6ZSA|1|XB | mt-tRNAVal | Homo sapiens | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | Electron microscopy | 4 | 2020-10-21 | |||
| 44 | 6ZSG|1|XB | mt-tRNA Val | Homo sapiens | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | Electron microscopy | 4 | 2020-10-14 | |||
| 45 | 3J9M|1|B | mt-tRNAVal | Homo sapiens | Structure of the human mitochondrial ribosome (class 1) | Electron microscopy | 3.5 | 2015-04-15 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_73428.18 | NR_4.0_73428.17 | 3.283 | (44) 7ODR|1|B, 7O9M|1|B, 7O9K|1|B, 7L20|1|B, 7L08|1|B, 7A5K|1|B3, 7A5J|1|B, 7A5I|1|B3, 7A5H|1|B, 6ZSG|1|XB, 6ZSD|1|XB, 7QI4|1|B, 6ZSC|1|XB, 7QH6|1|B, 6ZSA|1|XB, 7PO4|1|B, 6ZS9|1|XB, 7OIE|1|B, 6ZM6|1|B, 7OID|1|B, 6ZM5|1|B, 7OIC|1|B, 6VMI|1|B, 7OIB|1|B, 6VLZ|1|B, 7OIA|1|B, 6I9R|1|B, 7OI9|1|B, 5OOM|1|B, 7OI8|1|B, 5OOL|1|B, 7OI7|1|B, 3J9M|1|B, 3J7Y|1|B, 7OG4|1|XB, 7OF7|1|B, 7OF6|1|B, 7OF5|1|B, 7OF4|1|B, 7OF3|1|B, 7OF2|1|B, 7OF0|1|B, 7ODT|1|B, 7ODS|1|B | (1) 7QI6|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_73428.18 | NR_4.0_73428.19 | 3.287 | (45) 7QI4|1|B, 5OOM|1|B, 6ZSC|1|XB, 7L20|1|B, 7OF3|1|B, 7OI9|1|B, 7QH6|1|B, 5OOL|1|B, 6ZSA|1|XB, 7L08|1|B, 7OF2|1|B, 7OI8|1|B, 7PO4|1|B, 3J9M|1|B, 6ZS9|1|XB, 7A5K|1|B3, 7OF0|1|B, 7OI7|1|B, 7OIE|1|B, 3J7Y|1|B, 6ZM6|1|B, 7A5J|1|B, 7ODT|1|B, 7OG4|1|XB, 7OID|1|B, 6ZM5|1|B, 7A5I|1|B3, 7ODS|1|B, 7OF7|1|B, 7OIC|1|B, 6VMI|1|B, 7A5H|1|B, 7ODR|1|B, 7OF6|1|B, 6VLZ|1|B, 6ZSG|1|XB, 7O9M|1|B, 7OF5|1|B, 7OIB|1|B, 7QI6|1|B, 6I9R|1|B, 6ZSD|1|XB, 7O9K|1|B, 7OF4|1|B, 7OIA|1|B | (0) | (2) 8OIR|1|B9, 8OIT|1|B9 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7QH6|1|B | Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1 | ELECTRON MICROSCOPY | 3.08 | 56 |
| 2 | 7A5I|1|B3 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.7 | 56 |
| 3 | 7A5K|1|B3 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | ELECTRON MICROSCOPY | 3.7 | 56 |
| 4 | 3J7Y|1|B | Structure of the large ribosomal subunit from human mitochondria | ELECTRON MICROSCOPY | 3.4 | 57 |
| 5 | 3J9M|1|B | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 56 |
| 6 | 7OIC|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4 | ELECTRON MICROSCOPY | 3.1 | 56 |
| 7 | 7A5H|1|B | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | ELECTRON MICROSCOPY | 3.3 | 56 |
| 8 | 7A5J|1|B | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.1 | 56 |
| 9 | 5OOL|1|B | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.06 | 56 |
| 10 | 7OF7|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1). | ELECTRON MICROSCOPY | 2.5 | 56 |
| 11 | 7OF0|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1). | ELECTRON MICROSCOPY | 2.2 | 56 |
| 12 | 7OF3|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2). | ELECTRON MICROSCOPY | 2.7 | 56 |
| 13 | 7OF5|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2). | ELECTRON MICROSCOPY | 2.9 | 56 |
| 14 | 7OF2|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6. | ELECTRON MICROSCOPY | 2.7 | 56 |
| 15 | 7OF6|1|B | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2). | ELECTRON MICROSCOPY | 2.6 | 56 |
| 16 | 7OF4|1|B | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1). | ELECTRON MICROSCOPY | 2.7 | 56 |
| 17 | 5OOM|1|B | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.03 | 56 |
| 18 | 7OIA|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C | ELECTRON MICROSCOPY | 3.2 | 56 |
| 19 | 7OI7|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2 | ELECTRON MICROSCOPY | 3.5 | 56 |
| 20 | 7OI9|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B | ELECTRON MICROSCOPY | 3.3 | 56 |
| 21 | 7OIB|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D | ELECTRON MICROSCOPY | 3.3 | 56 |
| 22 | 7OIE|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B | ELECTRON MICROSCOPY | 3.5 | 56 |
| 23 | 7OID|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A | ELECTRON MICROSCOPY | 3.7 | 56 |
| 24 | 7OI8|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A | ELECTRON MICROSCOPY | 3.5 | 56 |
| 25 | 7O9M|1|B | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module | ELECTRON MICROSCOPY | 2.5 | 60 |
| 26 | 7L20|1|B | Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt. | ELECTRON MICROSCOPY | 3.15 | 56 |
| 27 | 7L08|1|B | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | ELECTRON MICROSCOPY | 3.49 | 56 |
| 28 | 6VLZ|1|B | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | ELECTRON MICROSCOPY | 2.97 | 56 |
| 29 | 6VMI|1|B | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | ELECTRON MICROSCOPY | 2.96 | 56 |
| 30 | 6ZS9|1|XB | Human mitochondrial ribosome in complex with ribosome recycling factor | ELECTRON MICROSCOPY | 4 | 59 |
| 31 | 6ZSG|1|XB | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 4 | 59 |
| 32 | 6ZSD|1|XB | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 3.7 | 59 |
| 33 | 6ZSA|1|XB | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | ELECTRON MICROSCOPY | 4 | 59 |
| 34 | 7OG4|1|XB | Human mitochondrial ribosome in complex with P/E-tRNA | ELECTRON MICROSCOPY | 3.8 | 59 |
| 35 | 6ZSC|1|XB | Human mitochondrial ribosome in complex with E-site tRNA | ELECTRON MICROSCOPY | 3.5 | 59 |
| 36 | 6I9R|1|B | Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin | ELECTRON MICROSCOPY | 3.9 | 60 |
| 37 | 7PO4|1|B | Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP) | ELECTRON MICROSCOPY | 2.56 | 69 |
| 38 | 7ODT|1|B | State C of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 72 |
| 39 | 6ZM5|1|B | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | ELECTRON MICROSCOPY | 2.89 | 72 |
| 40 | 6ZM6|1|B | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | ELECTRON MICROSCOPY | 2.59 | 72 |
| 41 | 7ODS|1|B | State B of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 72 |
| 42 | 7ODR|1|B | State A of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 2.9 | 72 |
| 43 | 7QI4|1|B | Human mitochondrial ribosome at 2.2 A resolution | ELECTRON MICROSCOPY | 2.21 | 69 |
| 44 | 7QI6|1|B | Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution | ELECTRON MICROSCOPY | 2.98 | 69 |
| 45 | 7O9K|1|B | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu | ELECTRON MICROSCOPY | 3.1 | 60 |