NR_4.0_74924.2

Members (17)
History
Heat map

#	IFE	Molecule	Organism	Title	Method	Res. Å	Date
1	3PF5\|1\|R (rep)	hexaribouracil (rU6)		Crystal structure of Bs-CspB in complex with rU6	X-ray diffraction	1.68	2011-09-21
2	5ELX\|1\|B	RNA (5'-R(PUPUPUPUPUPU)-3')	Saccharomyces cerevisiae	S. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3	X-ray diffraction	1.81	2016-02-24
3	3PEW\|1\|B	RNA (5'-R(PUPUPUPUPUPU)-3')		S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3	X-ray diffraction	1.5	2011-03-23
4	3PEY\|1\|B	RNA (5'-R(PUPUPUPUPUPU)-3')		S. cerevisiae Dbp5 bound to RNA and ADP BeF3	X-ray diffraction	1.4	2011-03-23
5	4ALP\|1\|E	HEXA URIDINE	synthetic construct	The Lin28b Cold shock domain in complex with hexauridine	X-ray diffraction	1.48	2012-09-05
6	2HYI\|1\|F	5'-R(UPUPUPUPUPU)-3'		Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNA	X-ray diffraction	2.3	2006-08-15
7	3EX7\|1\|F	RNA (5'-R(UPUPUPUPUPU)-3')		The crystal structure of EJC in its transition state	X-ray diffraction	2.3	2008-12-09
8	3EX7\|1\|J	RNA (5'-R(UPUPUPUPUPU)-3')		The crystal structure of EJC in its transition state	X-ray diffraction	2.3	2008-12-09
9	2HYI\|1\|L	5'-R(UPUPUPUPUPU)-3'		Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNA	X-ray diffraction	2.3	2006-08-15
10	4NL3\|1\|R	5'-R(UPUPUPUPUPU)-3'		Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA	X-ray diffraction	3.1	2014-09-10
11	4NL3\|1\|Z	5'-R(UPUPUPUPUPU)-3'		Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA	X-ray diffraction	3.1	2014-09-10
12	3O8R\|1\|C	RNA (5'-R(PUP(5BU)PUPUPUPU)-3')		Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV	X-ray diffraction	2.3	2011-01-05
13	3O8C\|1\|C	RNA (5'-R(PUP(5BU)PUPUPUPU)-3')		Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV	X-ray diffraction	2	2011-01-05
14	5BTE\|1\|C	RNA (5'-R(PUP(U37)P(U37)PUPUPU)-3')	Homo sapiens	Crystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+	X-ray diffraction	2.4	2015-07-22
15	5BTE\|1\|D	RNA (5'-R(PUP(U37)P(U37)PUPUPU)-3')	Homo sapiens	Crystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+	X-ray diffraction	2.4	2015-07-22
16	1N34\|1\|Z	A-SITE MESSENGER RNA FRAGMENT	Thermus thermophilus	Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position	X-ray diffraction	3.8	2002-11-29
17	3PF5\|1\|S	hexaribouracil (rU6)		Crystal structure of Bs-CspB in complex with rU6	X-ray diffraction	1.68	2011-09-21

Release history

Release	2.64	2.65	2.66
Date	2016-02-26	2016-03-04	2016-03-11

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_74924.2	NR_all_74924.1	2.64	(16) 3PF5\|1\|S, 3PF5\|1\|R, 3PEY\|1\|B, 3PEW\|1\|B, 3O8R\|1\|C, 3O8C\|1\|C, 3EX7\|1\|J, 3EX7\|1\|F, 2HYI\|1\|L, 2HYI\|1\|F, 1N34\|1\|Z, 5BTE\|1\|D, 5BTE\|1\|C, 4NL3\|1\|Z, 4NL3\|1\|R, 4ALP\|1\|E	(1) 5ELX\|1\|B	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	3O8R\|1\|C	Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV	X-RAY DIFFRACTION	2.3	5
2	3O8C\|1\|C	Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCV	X-RAY DIFFRACTION	2	5
3	3PF5\|1\|S	Crystal structure of Bs-CspB in complex with rU6	X-RAY DIFFRACTION	1.68	1
4	2HYI\|1\|F	Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNA	X-RAY DIFFRACTION	2.3	6
5	3EX7\|1\|J	The crystal structure of EJC in its transition state	X-RAY DIFFRACTION	2.3	6
6	2HYI\|1\|L	Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNA	X-RAY DIFFRACTION	2.3	6
7	3EX7\|1\|F	The crystal structure of EJC in its transition state	X-RAY DIFFRACTION	2.3	6
8	3PEW\|1\|B	S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3	X-RAY DIFFRACTION	1.5	6
9	3PEY\|1\|B	S. cerevisiae Dbp5 bound to RNA and ADP BeF3	X-RAY DIFFRACTION	1.4	6
10	5ELX\|1\|B	S. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3	X-RAY DIFFRACTION	1.81	6
11	1N34\|1\|Z	Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position	X-RAY DIFFRACTION	3.8	4
12	5BTE\|1\|C	Crystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+	X-RAY DIFFRACTION	2.4	4
13	5BTE\|1\|D	Crystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+	X-RAY DIFFRACTION	2.4	4
14	3PF5\|1\|R	Crystal structure of Bs-CspB in complex with rU6	X-RAY DIFFRACTION	1.68	9
15	4NL3\|1\|Z	Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA	X-RAY DIFFRACTION	3.1	6
16	4NL3\|1\|R	Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNA	X-RAY DIFFRACTION	3.1	6
17	4ALP\|1\|E	The Lin28b Cold shock domain in complex with hexauridine	X-RAY DIFFRACTION	1.48	6

Equivalence class NR_4.0_74924.2 Obsolete

Release history

Parents

Children