#PDBTitleRNA source organismCompoundsMethodResolutionDate
13PEY|1|B (rep)S. cerevisiae Dbp5 bound to RNA and ADP BeF3ATP-dependent RNA helicase DBP5, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')X-RAY DIFFRACTION1.42011-03-23
23PF5|1|RCrystal structure of Bs-CspB in complex with rU6Cold shock protein cspB, Cold shock protein cspB, hexaribouracil (rU6), hexaribouracil (rU6)X-RAY DIFFRACTION1.682011-09-21
35ELX|1|BS. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3Saccharomyces cerevisiaeATP-dependent RNA helicase DBP5, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')X-RAY DIFFRACTION1.812016-02-24
43PEW|1|BS. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3ATP-dependent RNA helicase DBP5, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')X-RAY DIFFRACTION1.52011-03-23
54ALP|1|EThe Lin28b Cold shock domain in complex with hexauridinesynthetic constructLIN28 ISOFORM B, LIN28 ISOFORM B, LIN28 ISOFORM B, LIN28 ISOFORM B, HEXA URIDINEX-RAY DIFFRACTION1.482012-09-05
62HYI|1|FStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAProtein mago nashi homolog, RNA-binding protein 8A, Probable ATP-dependent RNA helicase DDX48, Protein CASC3, 5'-R(*UP*UP*UP*UP*UP*U)-3', Protein mago nashi homolog, RNA-binding protein 8A, Probable ATP-dependent RNA helicase DDX48, Protein CASC3, 5'-R(*UP*UP*UP*UP*UP*U)-3'X-RAY DIFFRACTION2.32006-08-15
73EX7|1|FThe crystal structure of EJC in its transition stateProtein mago nashi homolog, RNA-binding protein 8A, Eukaryotic initiation factor 4A-III, Protein CASC3, Protein mago nashi homolog, RNA (5'-R(*UP*UP*UP*UP*UP*U)-3'), RNA-binding protein 8A, Eukaryotic initiation factor 4A-III, Protein CASC3, RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')X-RAY DIFFRACTION2.32008-12-09
83EX7|1|JThe crystal structure of EJC in its transition stateProtein mago nashi homolog, RNA-binding protein 8A, Eukaryotic initiation factor 4A-III, Protein CASC3, Protein mago nashi homolog, RNA (5'-R(*UP*UP*UP*UP*UP*U)-3'), RNA-binding protein 8A, Eukaryotic initiation factor 4A-III, Protein CASC3, RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')X-RAY DIFFRACTION2.32008-12-09
92HYI|1|LStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAProtein mago nashi homolog, RNA-binding protein 8A, Probable ATP-dependent RNA helicase DDX48, Protein CASC3, 5'-R(*UP*UP*UP*UP*UP*U)-3', Protein mago nashi homolog, RNA-binding protein 8A, Probable ATP-dependent RNA helicase DDX48, Protein CASC3, 5'-R(*UP*UP*UP*UP*UP*U)-3'X-RAY DIFFRACTION2.32006-08-15
104Y91|1|NCrystal Structure of a Thermotoga maritima Hfq homologsynthetic constructRNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')X-RAY DIFFRACTION2.662016-03-16
114Y91|1|OCrystal Structure of a Thermotoga maritima Hfq homologsynthetic constructRNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA-binding protein Hfq, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')X-RAY DIFFRACTION2.662016-03-16
124NL3|1|RCrystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAProtein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, 5'-R(*UP*UP*UP*UP*UP*U)-3', 5'-R(*UP*UP*UP*UP*UP*U)-3'X-RAY DIFFRACTION3.12014-09-10
134NL3|1|ZCrystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAProtein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, Protein hfq, 5'-R(*UP*UP*UP*UP*UP*U)-3', 5'-R(*UP*UP*UP*UP*UP*U)-3'X-RAY DIFFRACTION3.12014-09-10
143O8R|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVHCV NS3 protease/helicase, HCV NS3 protease/helicase, RNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3')X-RAY DIFFRACTION2.32011-01-05
153O8C|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVHCV NS3 protease/helicase, HCV NS3 protease/helicase, RNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3')X-RAY DIFFRACTION22011-01-05
165BTE|1|CCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+Homo sapiensAFR263Cp, AFR263Cp, RNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3'), RNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3')X-RAY DIFFRACTION2.42015-07-22
175BTE|1|DCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+Homo sapiensAFR263Cp, AFR263Cp, RNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3'), RNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3')X-RAY DIFFRACTION2.42015-07-22
181N34|1|ZStructure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon positionThermus thermophilus16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S2, 30S RIBOSOMAL PROTEIN S3, 30S RIBOSOMAL PROTEIN S4, 30S RIBOSOMAL PROTEIN S5, 30S RIBOSOMAL PROTEIN S6, 30S RIBOSOMAL PROTEIN S7, 30S RIBOSOMAL PROTEIN S8, 30S RIBOSOMAL PROTEIN S9, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, 30S RIBOSOMAL PROTEIN S12, 30S RIBOSOMAL PROTEIN S13, 30S RIBOSOMAL PROTEIN S14, 30S RIBOSOMAL PROTEIN S15, 30S RIBOSOMAL PROTEIN S16, 30S RIBOSOMAL PROTEIN S17, 30S RIBOSOMAL PROTEIN S18, 30S RIBOSOMAL PROTEIN S19, 30S RIBOSOMAL PROTEIN S20, 30S RIBOSOMAL PROTEIN THX, A-SITE MESSENGER RNA FRAGMENTX-RAY DIFFRACTION3.82002-11-29
195SZE|1|CCrystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5AunidentifiedRNA-binding protein Hfq, RNA (5'-R(P*UP*UP*U)-3')X-RAY DIFFRACTION1.52017-04-12
203PF5|1|SCrystal structure of Bs-CspB in complex with rU6Cold shock protein cspB, Cold shock protein cspB, hexaribouracil (rU6), hexaribouracil (rU6)X-RAY DIFFRACTION1.682011-09-21

Release history

Release2.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.150
Date2017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-14

Parents

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14ALP|1|EThe Lin28b Cold shock domain in complex with hexauridineX-RAY DIFFRACTION1.486
25SZE|1|CCrystal structure of Aquifex aeolicus Hfq-RNA complex at 1.5AX-RAY DIFFRACTION1.53
33O8R|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION2.35
43PF5|1|RCrystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.689
54Y91|1|OCrystal Structure of a Thermotoga maritima Hfq homologX-RAY DIFFRACTION2.666
64Y91|1|NCrystal Structure of a Thermotoga maritima Hfq homologX-RAY DIFFRACTION2.666
74NL3|1|RCrystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAX-RAY DIFFRACTION3.16
84NL3|1|ZCrystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAX-RAY DIFFRACTION3.16
93PF5|1|SCrystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.681
103O8C|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION25
111N34|1|ZStructure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon positionX-RAY DIFFRACTION3.84
123EX7|1|JThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
133EX7|1|FThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
142HYI|1|FStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
153PEW|1|BS. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-RAY DIFFRACTION1.56
165ELX|1|BS. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3X-RAY DIFFRACTION1.816
173PEY|1|BS. cerevisiae Dbp5 bound to RNA and ADP BeF3X-RAY DIFFRACTION1.46
182HYI|1|LStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
195BTE|1|DCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.44
205BTE|1|CCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.44