Equivalence class NR_4.0_75220.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7ECK|1|I+ 7ECK|1|J (rep) | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-ray diffraction | 2.79 | 2022-03-16 | |||
| 2 | 7ECK|1|G+ 7ECK|1|H | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-ray diffraction | 2.79 | 2022-03-16 | |||
| 3 | 7ECJ|1|A+ 7ECJ|1|B | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-A base pairs | X-ray diffraction | 3.1 | 2022-03-16 | |||
| 4 | 7ECK|1|E+ 7ECK|1|F | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-ray diffraction | 2.79 | 2022-03-16 | |||
| 5 | 7ECK|1|A+ 7ECK|1|B | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-ray diffraction | 2.79 | 2022-03-16 | |||
| 6 | 7ECL|1|E+ 7ECL|1|F | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-ray diffraction | 3.01 | 2022-03-16 | |||
| 7 | 7ECL|1|I+ 7ECL|1|J | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-ray diffraction | 3.01 | 2022-03-16 | |||
| 8 | 7ECL|1|K+ 7ECL|1|L | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-ray diffraction | 3.01 | 2022-03-16 | |||
| 9 | 7ECL|1|G+ 7ECL|1|H | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-ray diffraction | 3.01 | 2022-03-16 | |||
| 10 | 7ECL|1|A+ 7ECL|1|B | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-ray diffraction | 3.01 | 2022-03-16 | |||
| 11 | 7ECK|1|K+ 7ECK|1|L | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-ray diffraction | 2.79 | 2022-03-16 | |||
| 12 | 7ECL|1|C+ 7ECL|1|D | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-ray diffraction | 3.01 | 2022-03-16 | |||
| 13 | 7ECK|1|C+ 7ECK|1|D | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-ray diffraction | 2.79 | 2022-03-16 | |||
| 14 | 7ECJ|1|C | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | synthetic construct | RNA duplex containing C-A base pairs | X-ray diffraction | 3.1 | 2022-03-16 |
Release history
| Release | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 |
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| Date | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7ECL|1|A+7ECL|1|B | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-RAY DIFFRACTION | 3.01 | 11 |
| 2 | 7ECK|1|A+7ECK|1|B | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-RAY DIFFRACTION | 2.79 | 11 |
| 3 | 7ECJ|1|A+7ECJ|1|B | RNA duplex containing C-A base pairs | X-RAY DIFFRACTION | 3.1 | 11 |
| 4 | 7ECL|1|I+7ECL|1|J | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-RAY DIFFRACTION | 3.01 | 11 |
| 5 | 7ECK|1|I+7ECK|1|J | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-RAY DIFFRACTION | 2.79 | 11 |
| 6 | 7ECK|1|E+7ECK|1|F | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-RAY DIFFRACTION | 2.79 | 11 |
| 7 | 7ECL|1|E+7ECL|1|F | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-RAY DIFFRACTION | 3.01 | 11 |
| 8 | 7ECL|1|C+7ECL|1|D | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-RAY DIFFRACTION | 3.01 | 11 |
| 9 | 7ECK|1|C+7ECK|1|D | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-RAY DIFFRACTION | 2.79 | 11 |
| 10 | 7ECL|1|G+7ECL|1|H | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-RAY DIFFRACTION | 3.01 | 11 |
| 11 | 7ECK|1|G+7ECK|1|H | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-RAY DIFFRACTION | 2.79 | 11 |
| 12 | 7ECK|1|K+7ECK|1|L | RNA duplex containing C-Ag-A and U-Ag-A base pairs | X-RAY DIFFRACTION | 2.79 | 11 |
| 13 | 7ECL|1|K+7ECL|1|L | RNA duplex containing C-Ag-A and U-Ag-A base pair | X-RAY DIFFRACTION | 3.01 | 11 |
| 14 | 7ECJ|1|C | RNA duplex containing C-A base pairs | X-RAY DIFFRACTION | 3.1 | 11 |