BGSU RNA Site //

Equivalence class NR_4.0_75220.1 Current

#IFECompound(s)RNA source organismTitleMethodResolutionDate
17ECK|1|I+ 7ECK|1|J (rep)DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.792022-03-16
27ECK|1|G+ 7ECK|1|HDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.792022-03-16
37ECJ|1|A+ 7ECJ|1|BDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-A base pairsX-RAY DIFFRACTION3.12022-03-16
47ECK|1|E+ 7ECK|1|FDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.792022-03-16
57ECK|1|A+ 7ECK|1|BDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.792022-03-16
67ECL|1|E+ 7ECL|1|FDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.012022-03-16
77ECL|1|I+ 7ECL|1|JDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.012022-03-16
87ECL|1|K+ 7ECL|1|LDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.012022-03-16
97ECL|1|G+ 7ECL|1|HDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.012022-03-16
107ECL|1|A+ 7ECL|1|BDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.012022-03-16
117ECK|1|K+ 7ECK|1|LDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.792022-03-16
127ECL|1|C+ 7ECL|1|DDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.012022-03-16
137ECK|1|C+ 7ECK|1|DDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.792022-03-16
147ECJ|1|CDNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')RNA duplex containing C-A base pairsX-RAY DIFFRACTION3.12022-03-16

Release history

Release3.222
Date2022-03-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17ECL|1|A+7ECL|1|BRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0111
27ECK|1|A+7ECK|1|BRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7911
37ECJ|1|A+7ECJ|1|BRNA duplex containing C-A base pairsX-RAY DIFFRACTION3.111
47ECL|1|I+7ECL|1|JRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0111
57ECK|1|I+7ECK|1|JRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7911
67ECK|1|E+7ECK|1|FRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7911
77ECL|1|E+7ECL|1|FRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0111
87ECL|1|C+7ECL|1|DRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0111
97ECK|1|C+7ECK|1|DRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7911
107ECL|1|G+7ECL|1|HRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0111
117ECK|1|G+7ECK|1|HRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7911
127ECK|1|K+7ECK|1|LRNA duplex containing C-Ag-A and U-Ag-A base pairsX-RAY DIFFRACTION2.7911
137ECL|1|K+7ECL|1|LRNA duplex containing C-Ag-A and U-Ag-A base pairX-RAY DIFFRACTION3.0111
147ECJ|1|CRNA duplex containing C-A base pairsX-RAY DIFFRACTION3.111