Equivalence class NR_4.0_78233.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V9K|1|AW (rep) | Transfer RNA | transfer RNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.5 | 2014-07-09 |
| 2 | 4V9K|1|CW | Transfer RNA | transfer RNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.5 | 2014-07-09 |
| 3 | 4V9M|1|CW | Transfer RNA | transfer RNA, messenger RNA | Escherichia coli | Bacteria | RF00005 | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 4 | 2014-07-09 |
| 4 | 4V9M|1|AW | Transfer RNA | transfer RNA, messenger RNA | Escherichia coli | Bacteria | RF00005 | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 4 | 2014-07-09 |
| 5 | 4V9L|1|AW | Transfer RNA | transfer RNA, messenger RNA | Escherichia coli | Bacteria | RF00005 | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.5 | 2014-07-09 |
| 6 | 4V9L|1|CW | Transfer RNA | transfer RNA | Escherichia coli | Bacteria | RF00005 | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.5 | 2014-07-09 |
| 7 | 4W29|1|AW | Transfer RNA | tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state. | X-ray diffraction | 3.8 | 2014-10-01 |
| 8 | 4W29|1|CW | Transfer RNA | tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state. | X-ray diffraction | 3.8 | 2014-10-01 |
| 9 | 4V9J|1|AW | Transfer RNA | tRNA-Met, messenger RNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.86 | 2014-07-09 |
| 10 | 4V9J|1|CW | Transfer RNA | tRNA-Met, messenger RNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.86 | 2014-07-09 |
| 11 | 6Q97|1|8 | Transfer RNA | tRNA-Met | Escherichia coli | Bacteria | RF00005 | Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome | Electron microscopy | 3.9 | 2019-03-13 |
Release history
| Release | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_78233.2 | NR_4.0_78233.3 | 3.99 | (10) 4V9L|1|AW, 4V9M|1|AW, 4W29|1|AW, 4V9J|1|CW, 4V9K|1|CW, 4V9L|1|CW, 4V9M|1|CW, 4V9J|1|AW, 4W29|1|CW, 4V9K|1|AW | (1) 6Q97|1|8 | (0) |
| NR_4.0_78233.2 | NR_4.0_80098.1 | 3.99 | (1) 6Q97|1|8 | (10) 4V9K|1|CW, 4V9L|1|CW, 4V9M|1|CW, 4V9J|1|AW, 4W29|1|CW, 4V9K|1|AW, 4V9L|1|AW, 4V9M|1|AW, 4W29|1|AW, 4V9J|1|CW | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4W29|1|AW | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state. | X-RAY DIFFRACTION | 3.8 | 77 |
| 2 | 4W29|1|CW | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state. | X-RAY DIFFRACTION | 3.8 | 77 |
| 3 | 4V9J|1|AW | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.86 | 77 |
| 4 | 4V9J|1|CW | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.86 | 77 |
| 5 | 4V9M|1|CW | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 4 | 77 |
| 6 | 4V9L|1|CW | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.5 | 77 |
| 7 | 4V9L|1|AW | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.5 | 77 |
| 8 | 4V9M|1|AW | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 4 | 77 |
| 9 | 4V9K|1|CW | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.5 | 77 |
| 10 | 4V9K|1|AW | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.5 | 77 |
| 11 | 6Q97|1|8 | Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 77 |