Equivalence class NR_4.0_78541.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8EUG|1|1+ 8EUG|1|2 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (2863-MER), RNA (152-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated nascent 60S ribosome State 3 | Electron microscopy | 2.8 | 2022-11-30 |
| 2 | 8EUI|1|1+ 8EUI|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (2863-MER), RNA (152-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated nascent 60S ribosome (-fkbp39) State 3 | Electron microscopy | 3.1 | 2022-11-30 |
| 3 | 8ESQ|1|1+ 8ESQ|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (2231-MER), RNA (150-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated nascent 60S ribosome State 2 | Electron microscopy | 2.8 | 2022-11-30 |
| 4 | 8ETC|1|1+ 8ETC|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (2151-MER), RNA (147-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Fkbp39 associated nascent 60S ribosome State 4 | Electron microscopy | 3.1 | 2022-11-30 |
| 5 | 8ESR|1|1+ 8ESR|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (2142-MER), RNA (150-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated nascent 60S ribosome (-fkbp39) State 2 | Electron microscopy | 3.2 | 2022-11-30 |
| 6 | 8ETG|1|1+ 8ETG|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (1912-MER), RNA (146-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Fkbp39 associated 60S nascent ribosome State 3 | Electron microscopy | 3.4 | 2022-11-30 |
| 7 | 8ETJ|1|1+ 8ETJ|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (1758-MER), RNA (144-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Fkbp39 associated 60S nascent ribosome State 2 | Electron microscopy | 3.2 | 2022-11-30 |
| 8 | 8EV3|1|1+ 8EV3|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (1452-MER), RNA (150-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1B | Electron microscopy | 3 | 2022-11-30 |
| 9 | 8EUY|1|1+ 8EUY|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (1095-MER), RNA (148-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A | Electron microscopy | 3 | 2022-11-30 |
| 10 | 8EUP|1|1+ 8EUP|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (1422-MER), RNA (146-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated 60S nascent ribosome State 1A | Electron microscopy | 3.1 | 2022-11-30 |
| 11 | 8ETI|1|1+ 8ETI|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (1564-MER), RNA (152-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Fkbp39 associated 60S nascent ribosome State 1 | Electron microscopy | 3.7 | 2022-11-30 |
| 12 | 8ETH|1|1+ 8ETH|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RNA (1263-MER), RNA (130-MER) | Schizosaccharomyces pombe | Eukarya | RF02543 + RF00002 | Ytm1 associated 60S nascent ribosome State 1B | Electron microscopy | 3.8 | 2022-11-30 |
Release history
| Release | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8EUY|1|1+8EUY|1|2 | Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A | ELECTRON MICROSCOPY | 3 | 1433 |
| 2 | 8EV3|1|1+8EV3|1|2 | Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1B | ELECTRON MICROSCOPY | 3 | 1452 |
| 3 | 8EUP|1|1+8EUP|1|2 | Ytm1 associated 60S nascent ribosome State 1A | ELECTRON MICROSCOPY | 3.1 | 1422 |
| 4 | 8ETH|1|1+8ETH|1|2 | Ytm1 associated 60S nascent ribosome State 1B | ELECTRON MICROSCOPY | 3.8 | 1303 |
| 5 | 8ETI|1|1+8ETI|1|2 | Fkbp39 associated 60S nascent ribosome State 1 | ELECTRON MICROSCOPY | 3.7 | 1579 |
| 6 | 8ESR|1|1+8ESR|1|2 | Ytm1 associated nascent 60S ribosome (-fkbp39) State 2 | ELECTRON MICROSCOPY | 3.2 | 2143 |
| 7 | 8ESQ|1|1+8ESQ|1|2 | Ytm1 associated nascent 60S ribosome State 2 | ELECTRON MICROSCOPY | 2.8 | 2230 |
| 8 | 8ETG|1|1+8ETG|1|2 | Fkbp39 associated 60S nascent ribosome State 3 | ELECTRON MICROSCOPY | 3.4 | 2018 |
| 9 | 8ETJ|1|1+8ETJ|1|2 | Fkbp39 associated 60S nascent ribosome State 2 | ELECTRON MICROSCOPY | 3.2 | 1817 |
| 10 | 8ETC|1|1+8ETC|1|2 | Fkbp39 associated nascent 60S ribosome State 4 | ELECTRON MICROSCOPY | 3.1 | 2140 |
| 11 | 8EUI|1|1+8EUI|1|2 | Ytm1 associated nascent 60S ribosome (-fkbp39) State 3 | ELECTRON MICROSCOPY | 3.1 | 2855 |
| 12 | 8EUG|1|1+8EUG|1|2 | Ytm1 associated nascent 60S ribosome State 3 | ELECTRON MICROSCOPY | 2.8 | 2869 |