BGSU RNA Site //

Equivalence class NR_4.0_78541.1 Current

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
18EUG|1|1+ 8EUG|1|2 (rep)RNA (2863-MER), RNA (152-MER)Schizosaccharomyces pombeEukaryaYtm1 associated nascent 60S ribosome State 3Electron microscopy2.82022-11-30
28EUI|1|1+ 8EUI|1|2RNA (2863-MER), RNA (152-MER)Schizosaccharomyces pombeEukaryaYtm1 associated nascent 60S ribosome (-fkbp39) State 3Electron microscopy3.12022-11-30
38ESQ|1|1+ 8ESQ|1|2RNA (2231-MER), RNA (150-MER)Schizosaccharomyces pombeEukaryaYtm1 associated nascent 60S ribosome State 2Electron microscopy2.82022-11-30
48ETC|1|1+ 8ETC|1|2RNA (2151-MER), RNA (147-MER)Schizosaccharomyces pombeEukaryaFkbp39 associated nascent 60S ribosome State 4Electron microscopy3.12022-11-30
58ESR|1|1+ 8ESR|1|2RNA (2142-MER), RNA (150-MER)Schizosaccharomyces pombeEukaryaYtm1 associated nascent 60S ribosome (-fkbp39) State 2Electron microscopy3.22022-11-30
68ETG|1|1+ 8ETG|1|2RNA (1912-MER), RNA (146-MER)Schizosaccharomyces pombeEukaryaFkbp39 associated 60S nascent ribosome State 3Electron microscopy3.42022-11-30
78ETJ|1|1+ 8ETJ|1|2RNA (1758-MER), RNA (144-MER)Schizosaccharomyces pombeEukaryaFkbp39 associated 60S nascent ribosome State 2Electron microscopy3.22022-11-30
88EV3|1|1+ 8EV3|1|2RNA (1452-MER), RNA (150-MER)Schizosaccharomyces pombeEukaryaYtm1 associated 60S nascent ribosome (-Fkbp39) State 1BElectron microscopy32022-11-30
98EUY|1|1+ 8EUY|1|2RNA (1095-MER), RNA (148-MER)Schizosaccharomyces pombeEukaryaYtm1 associated nascent 60S ribosome (-fkbp39) State 1AElectron microscopy32022-11-30
108EUP|1|1+ 8EUP|1|2RNA (1422-MER), RNA (146-MER)Schizosaccharomyces pombeEukaryaYtm1 associated 60S nascent ribosome State 1AElectron microscopy3.12022-11-30
118ETI|1|1+ 8ETI|1|2RNA (1564-MER), RNA (152-MER)Schizosaccharomyces pombeEukaryaFkbp39 associated 60S nascent ribosome State 1Electron microscopy3.72022-11-30
128ETH|1|1+ 8ETH|1|2RNA (1263-MER), RNA (130-MER)Schizosaccharomyces pombeEukaryaYtm1 associated 60S nascent ribosome State 1BElectron microscopy3.82022-11-30

Release history

Release3.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.275
Date2022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18EUY|1|1+8EUY|1|2Ytm1 associated nascent 60S ribosome (-fkbp39) State 1AELECTRON MICROSCOPY31433
28EV3|1|1+8EV3|1|2Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1BELECTRON MICROSCOPY31452
38EUP|1|1+8EUP|1|2Ytm1 associated 60S nascent ribosome State 1AELECTRON MICROSCOPY3.11422
48ETH|1|1+8ETH|1|2Ytm1 associated 60S nascent ribosome State 1BELECTRON MICROSCOPY3.81303
58ETI|1|1+8ETI|1|2Fkbp39 associated 60S nascent ribosome State 1ELECTRON MICROSCOPY3.71579
68ESR|1|1+8ESR|1|2Ytm1 associated nascent 60S ribosome (-fkbp39) State 2ELECTRON MICROSCOPY3.22143
78ESQ|1|1+8ESQ|1|2Ytm1 associated nascent 60S ribosome State 2ELECTRON MICROSCOPY2.82230
88ETG|1|1+8ETG|1|2Fkbp39 associated 60S nascent ribosome State 3ELECTRON MICROSCOPY3.42018
98ETJ|1|1+8ETJ|1|2Fkbp39 associated 60S nascent ribosome State 2ELECTRON MICROSCOPY3.21817
108ETC|1|1+8ETC|1|2Fkbp39 associated nascent 60S ribosome State 4ELECTRON MICROSCOPY3.12140
118EUI|1|1+8EUI|1|2Ytm1 associated nascent 60S ribosome (-fkbp39) State 3ELECTRON MICROSCOPY3.12855
128EUG|1|1+8EUG|1|2Ytm1 associated nascent 60S ribosome State 3ELECTRON MICROSCOPY2.82869