#PDBTitleRNA source organismCompoundsMethodResolutionDate
11XPE|1|A+1XPE|1|B (rep)HIV-1 subtype B genomic RNA Dimerization Initiation Site5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION1.942005-10-18
22B8S|1|A+2B8S|1|BStructure of HIV-1(MAL) genomic RNA DIS5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.762005-10-25
31XP7|1|A+1XP7|1|BHIV-1 subtype F genomic RNA Dimerization Initiation Site5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.52005-10-18
42B8R|1|A+2B8R|1|BStructure oF HIV-1(LAI) genomic RNA DIS5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.62005-10-25
51XPF|1|A+1XPF|1|BHIV-1 subtype A genomic RNA Dimerization Initiation Site5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.32005-10-18
62FCY|1|A+2FCY|1|BHIV-1 DIS kissing-loop in complex with NeomycinHIV-1 DIS RNA, HIV-1 DIS RNAX-RAY DIFFRACTION2.22006-05-16
72FCX|1|A+2FCX|1|BHIV-1 DIS kissing-loop in complex with neamineHIV-1 DIS RNA, HIV-1 DIS RNAX-RAY DIFFRACTION22006-05-16
81ZCI|1|A+1ZCI|1|BHIV-1 DIS RNA subtype F- monoclinic form5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION1.652006-01-31
92FD0|1|A+2FD0|1|BHIV-1 DIS kissing-loop in complex with lividomycinHIV-1 DIS RNA, HIV-1 DIS RNAX-RAY DIFFRACTION1.82006-05-16
101Y3S|1|A+1Y3S|1|BHIV-1 DIS RNA subtype F- MPD form5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.252005-11-08
111Y3O|1|A+1Y3O|1|BHIV-1 DIS RNA subtype F- Mn soaked5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.72005-11-08
122FCZ|1|A+2FCZ|1|BHIV-1 DIS kissing-loop in complex with ribostamycinHIV-1 DIS RNA, HIV-1 DIS RNA, HIV-1 DIS RNA, HIV-1 DIS RNAX-RAY DIFFRACTION2.012006-05-16
131YXP|1|A+1YXP|1|BHIV-1 DIS RNA subtype F- Zn soaked5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION2.42006-01-31
141ZCI|1|C+1ZCI|1|DHIV-1 DIS RNA subtype F- monoclinic form5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', 5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'X-RAY DIFFRACTION1.652006-01-31
152FCZ|1|C+2FCZ|1|DHIV-1 DIS kissing-loop in complex with ribostamycinHIV-1 DIS RNA, HIV-1 DIS RNA, HIV-1 DIS RNA, HIV-1 DIS RNAX-RAY DIFFRACTION2.012006-05-16
161K9W|1|BHIV-1(MAL) RNA Dimerization Initiation SiteHIV-1 DIS(Mal)UU RNA, HIV-1 DIS(Mal)UU RNA, HIV-1 DIS(Mal)UU RNA, HIV-1 DIS(Mal)UU RNAX-RAY DIFFRACTION3.12001-11-30
171K9W|1|DHIV-1(MAL) RNA Dimerization Initiation SiteHIV-1 DIS(Mal)UU RNA, HIV-1 DIS(Mal)UU RNA, HIV-1 DIS(Mal)UU RNA, HIV-1 DIS(Mal)UU RNAX-RAY DIFFRACTION3.12001-11-30

Release history

Release2.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.150
Date2016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-14

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11ZCI|1|C+1ZCI|1|DHIV-1 DIS RNA subtype F- monoclinic formX-RAY DIFFRACTION1.6522
21ZCI|1|A+1ZCI|1|BHIV-1 DIS RNA subtype F- monoclinic formX-RAY DIFFRACTION1.6522
31XP7|1|A+1XP7|1|BHIV-1 subtype F genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.523
41Y3O|1|A+1Y3O|1|BHIV-1 DIS RNA subtype F- Mn soakedX-RAY DIFFRACTION2.722
51Y3S|1|A+1Y3S|1|BHIV-1 DIS RNA subtype F- MPD formX-RAY DIFFRACTION2.2522
61YXP|1|A+1YXP|1|BHIV-1 DIS RNA subtype F- Zn soakedX-RAY DIFFRACTION2.422
72B8S|1|A+2B8S|1|BStructure of HIV-1(MAL) genomic RNA DISX-RAY DIFFRACTION2.7623
81XPE|1|A+1XPE|1|BHIV-1 subtype B genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION1.9423
92B8R|1|A+2B8R|1|BStructure oF HIV-1(LAI) genomic RNA DISX-RAY DIFFRACTION2.623
101XPF|1|A+1XPF|1|BHIV-1 subtype A genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.323
111K9W|1|BHIV-1(MAL) RNA Dimerization Initiation SiteX-RAY DIFFRACTION3.123
121K9W|1|DHIV-1(MAL) RNA Dimerization Initiation SiteX-RAY DIFFRACTION3.123
132FCX|1|A+2FCX|1|BHIV-1 DIS kissing-loop in complex with neamineX-RAY DIFFRACTION222
142FCZ|1|C+2FCZ|1|DHIV-1 DIS kissing-loop in complex with ribostamycinX-RAY DIFFRACTION2.0122
152FCY|1|A+2FCY|1|BHIV-1 DIS kissing-loop in complex with NeomycinX-RAY DIFFRACTION2.222
162FD0|1|A+2FD0|1|BHIV-1 DIS kissing-loop in complex with lividomycinX-RAY DIFFRACTION1.822
172FCZ|1|A+2FCZ|1|BHIV-1 DIS kissing-loop in complex with ribostamycinX-RAY DIFFRACTION2.0122