#IFECompound(s)RNA source organismTitleMethodResolutionDate
16E1S|1|A (rep)RNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.82019-04-10
26E1T|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.82019-04-10
36E1W|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with PreQ1X-RAY DIFFRACTION1.692019-04-10
46E1U|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION1.942019-04-10
56VUH|1|APREQ1 RIBOSWITCHCaldanaerobacter subterraneusAPO PreQ1 riboswitch aptamer grown in Mn2+X-RAY DIFFRACTION22020-06-24
66VUI|1|APREQ1 RIBOSWITCHCaldanaerobacter subterraneusMetabolite-bound PreQ1 riboswitch with Mn2+X-RAY DIFFRACTION2.682020-06-24
76E1V|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION2.562019-04-10
83Q50|1|APREQ1 RIBOSWITCHStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound stateX-RAY DIFFRACTION2.752011-05-18
93Q51|1|APREQ1 RIBOSWITCHStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state.X-RAY DIFFRACTION2.852011-05-18
103GCA|1|APreQ1 riboswitchThe structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domainX-RAY DIFFRACTION2.752009-03-03

Release history

Release3.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.204
Date2020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_80276.2NR_4.0_80276.13.132(8) 6E1U|1|A, 6E1T|1|A, 6E1S|1|A, 3Q51|1|A, 3Q50|1|A, 3GCA|1|A, 6E1W|1|A, 6E1V|1|A(2) 6VUH|1|A, 6VUI|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_80276.2NR_4.0_80276.33.205(10) 6E1W|1|A, 6E1V|1|A, 6E1U|1|A, 6E1T|1|A, 6E1S|1|A, 3Q51|1|A, 6VUI|1|A, 3Q50|1|A, 6VUH|1|A, 3GCA|1|A(0) (2) 7E9I|1|A, 7E9E|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16VUI|1|AMetabolite-bound PreQ1 riboswitch with Mn2+X-RAY DIFFRACTION2.6833
23Q50|1|AStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound stateX-RAY DIFFRACTION2.7533
33GCA|1|AThe structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domainX-RAY DIFFRACTION2.7533
46E1V|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION2.5630
56E1U|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION1.9431
66E1S|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.831
76E1T|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.830
86VUH|1|AAPO PreQ1 riboswitch aptamer grown in Mn2+X-RAY DIFFRACTION233
93Q51|1|AStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state.X-RAY DIFFRACTION2.8532
106E1W|1|ACrystal structure of a class I PreQ1 riboswitch complexed with PreQ1X-RAY DIFFRACTION1.6931