#IFECompound(s)RNA source organismTitleMethodResolutionDate
16E1S|1|A (rep)RNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.82019-04-10
26E1T|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.82019-04-10
36E1W|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with PreQ1X-RAY DIFFRACTION1.692019-04-10
46E1U|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION1.942019-04-10
56VUH|1|APREQ1 RIBOSWITCHCaldanaerobacter subterraneusAPO PreQ1 riboswitch aptamer grown in Mn2+X-RAY DIFFRACTION22020-06-24
66VUI|1|APREQ1 RIBOSWITCHCaldanaerobacter subterraneusMetabolite-bound PreQ1 riboswitch with Mn2+X-RAY DIFFRACTION2.682020-06-24
76E1V|1|ARNA (33-MER)Caldanaerobacter subterraneusCrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION2.562019-04-10
83Q50|1|APREQ1 RIBOSWITCHStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound stateX-RAY DIFFRACTION2.752011-05-18
93Q51|1|APREQ1 RIBOSWITCHStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state.X-RAY DIFFRACTION2.852011-05-18
103GCA|1|APreQ1 riboswitchThe structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domainX-RAY DIFFRACTION2.752009-03-03

Release history

Release3.1323.1333.134
Date2020-06-242020-07-012020-07-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_80276.2NR_4.0_80276.13.132(8) 6E1V|1|A, 6E1U|1|A, 6E1T|1|A, 6E1S|1|A, 3Q51|1|A, 3Q50|1|A, 3GCA|1|A, 6E1W|1|A(2) 6VUH|1|A, 6VUI|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16VUI|1|AMetabolite-bound PreQ1 riboswitch with Mn2+X-RAY DIFFRACTION2.6833
23Q50|1|AStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound stateX-RAY DIFFRACTION2.7533
33GCA|1|AThe structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domainX-RAY DIFFRACTION2.7533
46E1V|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION2.5630
56E1U|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amineX-RAY DIFFRACTION1.9431
66E1S|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.831
76E1T|1|ACrystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amineX-RAY DIFFRACTION1.830
86VUH|1|AAPO PreQ1 riboswitch aptamer grown in Mn2+X-RAY DIFFRACTION233
93Q51|1|AStructural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state.X-RAY DIFFRACTION2.8532
106E1W|1|ACrystal structure of a class I PreQ1 riboswitch complexed with PreQ1X-RAY DIFFRACTION1.6931