Equivalence class NR_4.0_80360.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6TFF|1|A (rep) | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide (NAD+) | X-ray diffraction | 2.52 | 2020-09-23 |
| 2 | 6TFG|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 3-phosphate 5-phosphosulfate (APPS) | X-ray diffraction | 2.45 | 2020-09-23 |
| 3 | 6TF1|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine diphosphate (ADP) | X-ray diffraction | 2.4 | 2020-09-23 |
| 4 | 6TF3|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Cordycepin 5-triphosphate (3-dATP) | X-ray diffraction | 2.66 | 2020-09-23 |
| 5 | 6TF2|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 5-triphosphate (ATP) | X-ray diffraction | 2.55 | 2020-09-23 |
| 6 | 6TF0|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH) | X-ray diffraction | 2.1 | 2020-09-23 |
| 7 | 6TFH|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH); soaking with Manganese(II) (Mn2+) | X-ray diffraction | 2.95 | 2020-09-23 |
| 8 | 6TFE|1|A | nadA RNA | Chains: A | Candidatus Koribacter versatilis | Bacteria | RF03013 | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with N6-Methyl-adenosine-5'-triphosphate (m6ATP) | X-ray diffraction | 2.3 | 2020-09-23 |
Release history
| Release | 3.145 |
|---|---|
| Date | 2020-09-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6TF0|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH) | X-RAY DIFFRACTION | 2.1 | 51 |
| 2 | 6TFF|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide (NAD+) | X-RAY DIFFRACTION | 2.52 | 52 |
| 3 | 6TFE|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with N6-Methyl-adenosine-5'-triphosphate (m6ATP) | X-RAY DIFFRACTION | 2.3 | 52 |
| 4 | 6TFG|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 3-phosphate 5-phosphosulfate (APPS) | X-RAY DIFFRACTION | 2.45 | 52 |
| 5 | 6TF2|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 5-triphosphate (ATP) | X-RAY DIFFRACTION | 2.55 | 52 |
| 6 | 6TF3|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Cordycepin 5-triphosphate (3-dATP) | X-RAY DIFFRACTION | 2.66 | 52 |
| 7 | 6TF1|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine diphosphate (ADP) | X-RAY DIFFRACTION | 2.4 | 52 |
| 8 | 6TFH|1|A | Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH); soaking with Manganese(II) (Mn2+) | X-RAY DIFFRACTION | 2.95 | 51 |