#IFECompound(s)RNA source organismTitleMethodResolutionDate
15AXM|1|P (rep)RNA (75-MER)Saccharomyces cerevisiaeCrystal structure of Thg1 like protein (TLP) with tRNA(Phe)X-RAY DIFFRACTION2.212016-08-03
21EVV|1|APHENYLALANINE TRANSFER RNASaccharomycesCRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-RAY DIFFRACTION22000-05-01
35AXN|1|PRNA (75-MER)Saccharomyces cerevisiaeCrystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNPX-RAY DIFFRACTION2.72016-08-03
41OB2|1|BTRANSFER-RNA, PHESaccharomyces cerevisiaeE. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNAX-RAY DIFFRACTION3.352004-05-27
56LVR|1|Dyeast phenylalanine tRNASaccharomyces cerevisiaeCrystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNAX-RAY DIFFRACTION2.852020-08-12
63WC2|1|P76mer-tRNACrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.642013-12-18
76LVR|1|Byeast phenylalanine tRNASaccharomyces cerevisiaeCrystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNAX-RAY DIFFRACTION2.852020-08-12
83WC2|1|Q76mer-tRNACrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.642013-12-18
94TNA|1|ATRNAPHESaccharomyces cerevisiaeFURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHEX-RAY DIFFRACTION2.51978-04-12
101EHZ|1|ATRANSFER RNA (PHE)Saccharomyces cerevisiaeThe crystal structure of yeast phenylalanine tRNA at 1.93 A resolutionX-RAY DIFFRACTION1.932000-10-02
116XZ7|1|gfMet-Phe-tRNA(Phe)Saccharomyces cerevisiaeE. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.12020-07-22
121I9V|1|APHENYLALANINE TRANSFER RNASaccharomyces cerevisiaeCRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEXX-RAY DIFFRACTION2.62001-06-04
136XZB|1|g2fMet-Phe-tRNA(Phe)E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.542020-11-04
146XIR|1|AZTransfer RNASaccharomyces cerevisiaeCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.22020-08-26
156XIR|1|AXTransfer RNASaccharomyces cerevisiaeCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.22020-08-26
166GZ5|1|BwE/E-site-tRNA, mRNASaccharomyces cerevisiaetRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.52018-12-05
176GZ3|1|Bwpe/E-site-tRNA, mRNASaccharomyces cerevisiaetRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.62018-12-05
181TN1|1|ATRNAPHESaccharomyces cerevisiaeCRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNAX-RAY DIFFRACTION31987-01-15
191TN2|1|ATRNAPHESaccharomyces cerevisiaeCRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNAX-RAY DIFFRACTION31986-10-24
201TTT|1|FTRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.71996-12-23
215M1J|1|A3yeast Phe-tRNA-Phe, nonstop mRNASaccharomyces cerevisiaeNonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.32017-01-18
226GQV|1|AYTransfer RNA - Phe, Messenger RNASaccharomyces cerevisiaeCryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY42018-07-11
234TRA|1|ATRNAPHESaccharomyces cerevisiaeRESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALSX-RAY DIFFRACTION31987-11-06
246TNA|1|ATRNAPHESaccharomyces cerevisiaeCRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENTX-RAY DIFFRACTION2.71979-01-16
256GQB|1|AXTransfer RNA - Phe, Messenger RNASaccharomyces cerevisiaeCryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.92018-07-11
261TTT|1|DTRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.71996-12-23
271TTT|1|ETRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.71996-12-23
281TRA|1|ATRNAPHESaccharomyces cerevisiaeRESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLESX-RAY DIFFRACTION31986-07-14

Release history

Release3.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.183
Date2020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-16

Children

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13WC2|1|QCrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6473
23WC2|1|PCrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6474
31EVV|1|ACRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-RAY DIFFRACTION262
41I9V|1|ACRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEXX-RAY DIFFRACTION2.674
54TRA|1|ARESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALSX-RAY DIFFRACTION362
66TNA|1|ACRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENTX-RAY DIFFRACTION2.762
71EHZ|1|AThe crystal structure of yeast phenylalanine tRNA at 1.93 A resolutionX-RAY DIFFRACTION1.9362
81TRA|1|ARESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLESX-RAY DIFFRACTION362
94TNA|1|AFURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHEX-RAY DIFFRACTION2.562
101TN1|1|ACRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNAX-RAY DIFFRACTION362
111TN2|1|ACRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNAX-RAY DIFFRACTION362
125AXN|1|PCrystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNPX-RAY DIFFRACTION2.765
135AXM|1|PCrystal structure of Thg1 like protein (TLP) with tRNA(Phe)X-RAY DIFFRACTION2.2172
146LVR|1|BCrystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNAX-RAY DIFFRACTION2.8558
156LVR|1|DCrystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNAX-RAY DIFFRACTION2.8558
165M1J|1|A3Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.362
176XZ7|1|gE. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.161
186XZB|1|g2E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.5461
191OB2|1|BE. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNAX-RAY DIFFRACTION3.3563
201TTT|1|EPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
211TTT|1|FPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
221TTT|1|DPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
236GZ5|1|BwtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.576
246GZ3|1|BwtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.676
256GQV|1|AYCryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY476
266GQB|1|AXCryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.976
276XIR|1|AZCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.273
286XIR|1|AXCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.273