Equivalence class NR_4.0_83891.18 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WF9|1|Y (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 2015-10-21 |
| 2 | 5HKV|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-RAY DIFFRACTION | 3.66 | 2017-05-03 |
| 3 | 4WFA|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 2015-10-21 |
| 4 | 5HL7|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-RAY DIFFRACTION | 3.55 | 2016-12-21 |
| 5 | 4WCE|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-RAY DIFFRACTION | 3.53 | 2015-10-21 |
| 6 | 4WFB|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 2015-10-21 |
| 7 | 5NRG|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 2017-08-09 |
| 8 | 6S0Z|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 2019-08-21 |
| 9 | 6S0X|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 2019-08-21 |
| 10 | 6HMA|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 2018-11-14 |
| 11 | 5NGM|1|AB | 5S ribosomal RNA | 5S Ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2017-10-04 |
| 12 | 7NHM|1|B | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00001 | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 2021-05-05 |
| 13 | 7NHL|1|B | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00001 | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 2021-05-05 |
| 14 | 6YEF|1|B | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus subsp. aureus NCTC 8325 | Bacteria | RF00001 | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 2021-01-27 |
| 15 | 6SJ6|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.23 | 2020-04-08 |
| 16 | 5T7V|1|C | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 2017-05-31 |
| 17 | 6S12|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.2 | 2019-08-21 |
| 18 | 5ND8|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 2017-06-28 |
| 19 | 5ND9|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 2017-06-28 |
| 20 | 5LI0|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 2016-12-28 |
| 21 | 5TCU|1|C | 5S ribosomal RNA | 5S rRNA CHAIN | Staphylococcus aureus | Bacteria | RF00001 | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 2017-05-24 |
| 22 | 6S13|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.58 | 2019-08-21 |
Release history
| Release | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_83891.18 | NR_4.0_83891.17 | 3.177 | (20) 6S0X|1|B, 6HMA|1|B, 5TCU|1|C, 5T7V|1|C, 5NRG|1|Y, 5NGM|1|AB, 5ND9|1|B, 5ND8|1|B, 5LI0|1|B, 5HL7|1|Y, 5HKV|1|Y, 4WFB|1|Y, 6YEF|1|B, 4WFA|1|Y, 6SJ6|1|B, 4WF9|1|Y, 6S13|1|B, 4WCE|1|Y, 6S12|1|B, 6S0Z|1|B | (2) 7NHL|1|B, 7NHM|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_83891.18 | NR_4.0_83891.19 | 3.205 | (22) 5NGM|1|AB, 6HMA|1|B, 6S13|1|B, 7NHM|1|B, 4WF9|1|Y, 5HL7|1|Y, 5ND9|1|B, 5TCU|1|C, 6S12|1|B, 7NHL|1|B, 4WCE|1|Y, 5HKV|1|Y, 5ND8|1|B, 5T7V|1|C, 6S0Z|1|B, 6YEF|1|B, 4WFB|1|Y, 5NRG|1|Y, 6S0X|1|B, 6SJ6|1|B, 4WFA|1|Y, 5LI0|1|B | (0) | (4) 7ASM|1|B, 7ASP|1|3, 7ASO|1|C, 7ASN|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5T7V|1|C | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 114 |
| 2 | 5TCU|1|C | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 114 |
| 3 | 5HL7|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-RAY DIFFRACTION | 3.55 | 114 |
| 4 | 5NRG|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 114 |
| 5 | 5HKV|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-RAY DIFFRACTION | 3.66 | 114 |
| 6 | 4WCE|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-RAY DIFFRACTION | 3.53 | 114 |
| 7 | 4WFA|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 114 |
| 8 | 4WF9|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 114 |
| 9 | 4WFB|1|Y | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 114 |
| 10 | 5LI0|1|B | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 114 |
| 11 | 5ND9|1|B | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 114 |
| 12 | 5ND8|1|B | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 114 |
| 13 | 6YEF|1|B | 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.2 | 115 |
| 14 | 6HMA|1|B | Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit | ELECTRON MICROSCOPY | 2.65 | 115 |
| 15 | 7NHM|1|B | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 113 |
| 16 | 7NHL|1|B | VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.1 | 113 |
| 17 | 5NGM|1|AB | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 115 |
| 18 | 6S0Z|1|B | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.3 | 114 |
| 19 | 6S0X|1|B | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin. | ELECTRON MICROSCOPY | 2.42 | 115 |
| 20 | 6S12|1|B | Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.2 | 115 |
| 21 | 6S13|1|B | Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22). | ELECTRON MICROSCOPY | 3.58 | 115 |
| 22 | 6SJ6|1|B | Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.23 | 112 |