#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18G1I|1|B (rep)sgRNAStreptococcus pyogenesSpCas9 with sgRNA and target DNAElectron microscopy3.122023-05-17
28T6O|1|BgRNAStreptococcus pyogenesSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loopElectron microscopy3.12024-05-01
37S36|1|RSingle-guide RNAStreptococcus pyogenesCas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, closed-protein/bent-DNA conformationElectron microscopy3.22022-04-20
47S38|1|RSingle-guide RNAStreptococcus pyogenesCas9:sgRNA:DNA (S. pyogenes) forming a 3-base-pair R-loopElectron microscopy3.32022-04-20
57S3H|1|RSingle-guide RNAStreptococcus pyogenesCas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, open-protein/linear-DNA conformationElectron microscopy2.52022-04-20
67S37|1|RSingle-guide RNAStreptococcus pyogenesCas9:sgRNA (S. pyogenes) in the open-protein conformationElectron microscopy3.22022-04-20

Release history

Release3.3333.3343.3353.3363.337
Date2024-05-012024-05-082024-05-152024-05-222024-05-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17S37|1|RCas9:sgRNA (S. pyogenes) in the open-protein conformationELECTRON MICROSCOPY3.246
27S3H|1|RCas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, open-protein/linear-DNA conformationELECTRON MICROSCOPY2.530
37S38|1|RCas9:sgRNA:DNA (S. pyogenes) forming a 3-base-pair R-loopELECTRON MICROSCOPY3.387
47S36|1|RCas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, closed-protein/bent-DNA conformationELECTRON MICROSCOPY3.287
58T6O|1|BSpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loopELECTRON MICROSCOPY3.187
68G1I|1|BSpCas9 with sgRNA and target DNAELECTRON MICROSCOPY3.1298
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