#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14IOA|1|X (rep)Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
24IO9|1|XLarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
34IOC|1|XLarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.62013-03-06
45DM6|1|XLarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction2.92015-11-11
52ZJR|1|XLarge subunit ribosomal RNAribosomal 23S RNADeinococcus radioduransBacteriaRF02541Refined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction2.912008-06-17
63CF5|1|XLarge subunit ribosomal RNARRNA-23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.32008-06-17
72ZJQ|1|XLarge subunit ribosomal RNAribosomal 23S RNADeinococcus radioduransBacteriaRF02541Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-ray diffraction3.32008-06-17
82ZJP|1|XLarge subunit ribosomal RNARIBOSOMAL 23S RNADeinococcus radioduransBacteriaRF02541Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.72008-06-17
94U67|1|XLarge subunit ribosomal RNA23s RNADeinococcus radioduransBacteriaRF02541Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-ray diffraction3.652015-08-05
104WFN|1|XLarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycinX-ray diffraction3.542015-12-23
113DLL|1|XLarge subunit ribosomal RNArRNA-23S ribosomal RNADeinococcus radioduransBacteriaRF02541The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-ray diffraction3.52008-09-16
125DM7|1|XLarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-ray diffraction32015-11-11
132AAR|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.X-ray diffraction3.52005-08-23
142OGM|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-571519X-ray diffraction3.52007-05-01
153PIO|1|XLarge subunit ribosomal RNARIBOSOMAL 23S RNADeinococcus radioduransBacteriaRF02541Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.252011-02-23
163JQ4|1|ALarge subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-ray diffraction3.522010-09-08
172D3O|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radioduransX-ray diffraction3.352005-12-06
181Y69|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction3.332005-03-01
193PIP|1|XLarge subunit ribosomal RNARIBOSOMAL 23S RNADeinococcus radioduransBacteriaRF02541Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.452011-02-23
202OGO|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)X-ray diffraction3.662007-05-01
211JZY|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-ray diffraction3.52001-10-26
221K01|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-ray diffraction3.52001-10-26
231JZX|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-ray diffraction3.12001-10-26
241JZZ|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-ray diffraction3.82001-10-26
251J5A|1|ALarge subunit ribosomal RNA23S RRNADeinococcus radioduransBacteriaRF02541STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIAX-ray diffraction3.52002-03-08
262O44|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycinX-ray diffraction3.32007-12-04
272OGN|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-280080X-ray diffraction3.562007-05-01
281NWX|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-ray diffraction3.52003-03-18
291OND|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTICX-ray diffraction3.42003-04-15
301NWY|1|0Large subunit ribosomal RNA23S RIBOSOMAL RRNADeinococcus radioduransBacteriaRF02541COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-ray diffraction3.32003-03-18
311NKW|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-ray diffraction3.12003-02-11
323FWO|1|ALarge subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541The large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-ray diffraction3.712010-01-19
331NJO|1|0Large subunit ribosomal RNA23S ribosomal RNA, RNA ACC(Puromycin)Deinococcus radioduransBacteriaRF02541The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)X-ray diffraction3.72003-02-11
341P9X|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTICX-ray diffraction3.42003-08-05
351NJP|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)X-ray diffraction3.52003-02-11
361NJM|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycinX-ray diffraction3.62003-02-11
371NJN|1|0Large subunit ribosomal RNA23S ribosomal RNADeinococcus radioduransBacteriaRF02541The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycinX-ray diffraction3.72003-02-11
382O43|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide erythromycylamineX-ray diffraction3.62007-12-04
391SM1|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-ray diffraction3.422004-08-03
401XBP|1|0Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-ray diffraction3.52005-03-01
411Z58|1|2Large subunit ribosomal RNA23S RIBOSOMAL RNADeinococcus radioduransBacteriaRF02541Crystal structure of a complex of the ribosome large subunit with rapamycinX-ray diffraction3.82005-06-28
422O45|1|ALarge subunit ribosomal RNA23S rRNADeinococcus radioduransBacteriaRF02541Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874X-ray diffraction3.62007-12-04

Release history

Release2.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.100
Date2015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-04

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.

#SPDBTitleMethodResolutionLength
1
2D3O|1|0
Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radioduransX-RAY DIFFRACTION3.352802
2
5DM7|1|X
Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-RAY DIFFRACTION32780
3
5DM6|1|X
Crystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION2.92780
4
4WFN|1|X
Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycinX-RAY DIFFRACTION3.542680
5
4U67|1|X
Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-RAY DIFFRACTION3.652667
6
4IOC|1|X
Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.62686
7
4IO9|1|X
Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.22686
8
4IOA|1|X
Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.22686
9
2ZJR|1|X
Refined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION2.912686
10
2ZJQ|1|X
Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-RAY DIFFRACTION3.32686
11
3CF5|1|X
Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.32686
12
2ZJP|1|X
Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.72686
13
3PIP|1|X
Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.452644
14
3PIO|1|X
Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.252657
15
3DLL|1|X
The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-RAY DIFFRACTION3.52686
16
3FWO|1|A
The large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-RAY DIFFRACTION3.712765
17
2O44|1|A
Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycinX-RAY DIFFRACTION3.32766
18
2O43|1|A
Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide erythromycylamineX-RAY DIFFRACTION3.62766
19
2OGN|1|0
The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-280080X-RAY DIFFRACTION3.562766
20
2OGM|1|0
The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-571519X-RAY DIFFRACTION3.52766
21
2OGO|1|0
The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)X-RAY DIFFRACTION3.662765
22
2AAR|1|0
Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.X-RAY DIFFRACTION3.52766
23
3JQ4|1|A
The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-RAY DIFFRACTION3.522765
24
1P9X|1|0
THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTICX-RAY DIFFRACTION3.42738
25
1SM1|1|0
COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-RAY DIFFRACTION3.422766
26
1XBP|1|0
Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-RAY DIFFRACTION3.52766
27
1OND|1|0
THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTICX-RAY DIFFRACTION3.42765
28
1NKW|1|0
Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-RAY DIFFRACTION3.12766
29
1NWX|1|0
COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-RAY DIFFRACTION3.52766
30
1NWY|1|0
COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-RAY DIFFRACTION3.32766
31
1NJP|1|0
The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)X-RAY DIFFRACTION3.52766
32
1NJO|1|0
The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)X-RAY DIFFRACTION3.72766
33
1NJN|1|0
The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycinX-RAY DIFFRACTION3.72766
34
1NJM|1|0
The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycinX-RAY DIFFRACTION3.62766
35
1J5A|1|A
STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIAX-RAY DIFFRACTION3.52774
36
1JZZ|1|A
Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.82774
37
1JZY|1|A
Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.52774
38
1JZX|1|A
Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.12774
39
1K01|1|A
Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in EubacteriaX-RAY DIFFRACTION3.52774
40
1Y69|1|0
RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION3.332766
41
1Z58|1|2
Crystal structure of a complex of the ribosome large subunit with rapamycinX-RAY DIFFRACTION3.82766
42
2O45|1|A
Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874X-RAY DIFFRACTION3.62766

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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