Equivalence class NR_4.0_89429.5 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4FEN|1|B (rep) | Purine riboswitch | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.35 | 2013-02-27 | ||
| 2 | 4FEO|1|B | Purine riboswitch | U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-ray diffraction | 1.6 | 2013-02-27 | ||
| 3 | 4FEL|1|B | Purine riboswitch | U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.6 | 2013-02-27 | ||
| 4 | 4FEP|1|B | Purine riboswitch | A24U/U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-ray diffraction | 1.65 | 2013-02-27 | ||
| 5 | 4FEJ|1|B | Purine riboswitch | A24U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.5 | 2013-02-27 | ||
| 6 | 4FE5|1|B | Purine riboswitch | xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.32 | 2012-06-27 | ||
| 7 | 2XNZ|1|A | Purine riboswitch | Guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening | X-ray diffraction | 1.59 | 2011-04-06 |
| 8 | 2XNW|1|A | Purine riboswitch | GUANINE RIBOSWITCH | Bacillus subtilis | Bacteria | RF00167 | XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING | X-ray diffraction | 1.5 | 2011-04-06 |
| 9 | 6UBU|1|B | Purine riboswitch | Guanine riboswitch aptamer domain | Bacillus subtilis | Bacteria | RF00167 | 1.60 A resolution structure of the guanine riboswitch bound to guanine | X-ray diffraction | 1.6 | 2020-07-22 |
| 10 | 6UC7|1|B | Purine riboswitch | guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | Structure of guanine riboswitch bound to N2-acetyl guanine | X-ray diffraction | 1.8 | 2020-07-22 |
| 11 | 3GOT|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Guanine riboswitch C74U mutant bound to 2-fluoroadenine. | X-ray diffraction | 1.95 | 2009-06-23 | ||
| 12 | 6UC9|1|B | Purine riboswitch | Guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | Guanine riboswitch bound to O6-cyclohexylmethyl guanine | X-ray diffraction | 1.94 | 2020-07-22 |
| 13 | 6UC8|1|B | Purine riboswitch | Guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | Guanine riboswitch bound to 8-aminoguanine | X-ray diffraction | 1.9 | 2020-07-22 |
| 14 | 2G9C|1|A | Purine riboswitch | guanine riboswitch | RF00167 | Modified pyrimidines Specifically bind the purine riboswitch | X-ray diffraction | 1.7 | 2006-11-21 | ||
| 15 | 3GAO|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Crystal structure of the guanine riboswitch bound to xanthine. | X-ray diffraction | 1.9 | 2009-06-23 | ||
| 16 | 3GER|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Guanine riboswitch bound to 6-chloroguanine | X-ray diffraction | 1.7 | 2009-06-23 | ||
| 17 | 2EES|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Guanine riboswitch A21U, U75A mutant bound to hypoxanthine | X-ray diffraction | 1.75 | 2007-11-13 | ||
| 18 | 3GOG|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine | X-ray diffraction | 2.1 | 2009-06-23 | ||
| 19 | 3DS7|1|A | Purine riboswitch | 67-MER | RF00167 | Structure of an RNA-2'-deoxyguanosine complex | X-ray diffraction | 1.85 | 2009-02-17 | ||
| 20 | 2EET|1|A | Purine riboswitch | Guanine Riboswitch | RF00167 | Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||
| 21 | 3FO4|1|A | Purine riboswitch | Guanine riboswitch C74U mutant | RF00167 | Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine | X-ray diffraction | 1.9 | 2009-06-23 | ||
| 22 | 2EEV|1|A | Purine riboswitch | guanine riboswitch | RF00167 | Guanine riboswitch U22C, A52G mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||
| 23 | 3DS7|1|B | Purine riboswitch | 67-MER | RF00167 | Structure of an RNA-2'-deoxyguanosine complex | X-ray diffraction | 1.85 | 2009-02-17 | ||
| 24 | 5C7U|1|B | Purine riboswitch | 5'-monophosphate wt guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | 5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine. | X-ray diffraction | 3.05 | 2015-08-12 |
| 25 | 3FO6|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Crystal structure of guanine riboswitch bound to 6-O-methylguanine | X-ray diffraction | 1.9 | 2009-06-23 | ||
| 26 | 3G4M|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Crystal structure of guanine riboswitch bound to 2-aminopurine | X-ray diffraction | 2.4 | 2009-06-23 | ||
| 27 | 3GES|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine | X-ray diffraction | 2.15 | 2009-06-23 | ||
| 28 | 2B57|1|A | Purine riboswitch | 65-MER | RF00167 | Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine | X-ray diffraction | 2.15 | 2006-05-23 | ||
| 29 | 2EEW|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Guanine Riboswitch U47C mutant bound to hypoxanthine | X-ray diffraction | 2.25 | 2007-11-13 | ||
| 30 | 2EEU|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Guanine riboswitch U22A, A52U mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||
| 31 | 5C7W|1|C | Purine riboswitch | 5'-monophosphate Z:P guanine riboswitch | synthetic construct | Synthetic | RF00167 | 5'-monophosphate Z:P Guanine Riboswitch bound to hypoxanthine. | X-ray diffraction | 3.22 | 2015-08-12 |
| 32 | 2XO1|1|A | Purine riboswitch | Guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine | X-ray diffraction | 1.6 | 2011-04-06 |
Release history
| Release | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 |
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| Date | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_89429.5 | NR_4.0_89429.4 | 3.151 | (32) 2EET|1|A, 6UC7|1|B, 4FEO|1|B, 3GOT|1|A, 3G4M|1|A, 2XO1|1|A, 2EEV|1|A, 6UC9|1|B, 5C7U|1|B, 4FEJ|1|B, 3GER|1|A, 3DS7|1|B, 2G9C|1|A, 2EES|1|A, 6UBU|1|B, 4FEN|1|B, 3GOG|1|A, 3FO6|1|A, 2XNZ|1|A, 2EEU|1|A, 6UC8|1|B, 4FEP|1|B, 4FE5|1|B, 3GAO|1|A, 3DS7|1|A, 2EEW|1|A, 2B57|1|A, 5C7W|1|C, 4FEL|1|B, 3GES|1|A, 3FO4|1|A, 2XNW|1|A | (0) | (1) 1U8D|1|A |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5C7U|1|B | 5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine. | X-RAY DIFFRACTION | 3.05 | 67 |
| 2 | 5C7W|1|C | 5'-monophosphate Z:P Guanine Riboswitch bound to hypoxanthine. | X-RAY DIFFRACTION | 3.22 | 65 |
| 3 | 6UC7|1|B | Structure of guanine riboswitch bound to N2-acetyl guanine | X-RAY DIFFRACTION | 1.8 | 67 |
| 4 | 4FEN|1|B | Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.35 | 67 |
| 5 | 4FEP|1|B | Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-RAY DIFFRACTION | 1.65 | 67 |
| 6 | 4FEL|1|B | Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.6 | 67 |
| 7 | 4FEO|1|B | Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-RAY DIFFRACTION | 1.6 | 67 |
| 8 | 3G4M|1|A | Crystal structure of guanine riboswitch bound to 2-aminopurine | X-RAY DIFFRACTION | 2.4 | 67 |
| 9 | 3GOT|1|A | Guanine riboswitch C74U mutant bound to 2-fluoroadenine. | X-RAY DIFFRACTION | 1.95 | 67 |
| 10 | 2B57|1|A | Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine | X-RAY DIFFRACTION | 2.15 | 65 |
| 11 | 4FEJ|1|B | Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.5 | 67 |
| 12 | 2XNZ|1|A | xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening | X-RAY DIFFRACTION | 1.59 | 65 |
| 13 | 2G9C|1|A | Modified pyrimidines Specifically bind the purine riboswitch | X-RAY DIFFRACTION | 1.7 | 67 |
| 14 | 3GER|1|A | Guanine riboswitch bound to 6-chloroguanine | X-RAY DIFFRACTION | 1.7 | 67 |
| 15 | 3FO4|1|A | Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine | X-RAY DIFFRACTION | 1.9 | 63 |
| 16 | 2EES|1|A | Guanine riboswitch A21U, U75A mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.75 | 67 |
| 17 | 2EET|1|A | Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 |
| 18 | 4FE5|1|B | Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.32 | 67 |
| 19 | 2XO1|1|A | xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine | X-RAY DIFFRACTION | 1.6 | 65 |
| 20 | 6UC9|1|B | Guanine riboswitch bound to O6-cyclohexylmethyl guanine | X-RAY DIFFRACTION | 1.94 | 67 |
| 21 | 3GOG|1|A | Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine | X-RAY DIFFRACTION | 2.1 | 65 |
| 22 | 3FO6|1|A | Crystal structure of guanine riboswitch bound to 6-O-methylguanine | X-RAY DIFFRACTION | 1.9 | 67 |
| 23 | 2EEW|1|A | Guanine Riboswitch U47C mutant bound to hypoxanthine | X-RAY DIFFRACTION | 2.25 | 67 |
| 24 | 6UBU|1|B | 1.60 A resolution structure of the guanine riboswitch bound to guanine | X-RAY DIFFRACTION | 1.6 | 67 |
| 25 | 6UC8|1|B | Guanine riboswitch bound to 8-aminoguanine | X-RAY DIFFRACTION | 1.9 | 67 |
| 26 | 2XNW|1|A | XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING | X-RAY DIFFRACTION | 1.5 | 65 |
| 27 | 2EEU|1|A | Guanine riboswitch U22A, A52U mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 |
| 28 | 3GAO|1|A | Crystal structure of the guanine riboswitch bound to xanthine. | X-RAY DIFFRACTION | 1.9 | 67 |
| 29 | 3GES|1|A | Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine | X-RAY DIFFRACTION | 2.15 | 67 |
| 30 | 2EEV|1|A | Guanine riboswitch U22C, A52G mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 |
| 31 | 3DS7|1|A | Structure of an RNA-2'-deoxyguanosine complex | X-RAY DIFFRACTION | 1.85 | 67 |
| 32 | 3DS7|1|B | Structure of an RNA-2'-deoxyguanosine complex | X-RAY DIFFRACTION | 1.85 | 67 |