NR_4.0_90506.13

Members (68)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4V88\|1\|A5+ 4V88\|1\|A8 (rep)	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
2	4V88\|1\|A1+ 4V88\|1\|A4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
3	4U4Q\|1\|5+ 4U4Q\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
4	4U3U\|1\|1+ 4U3U\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
5	4U4R\|1\|1+ 4U4R\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
6	4U4R\|1\|5+ 4U4R\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
7	4U52\|1\|5+ 4U52\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
8	4U4U\|1\|1+ 4U4U\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
9	4U4Z\|1\|1+ 4U4Z\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
10	5LYB\|1\|5+ 5LYB\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
11	5DGV\|1\|5+ 5DGV\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(CPCP(8AN)(Pro)*(Pro))-3')	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
12	4U4Q\|1\|1+ 4U4Q\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
13	5I4L\|1\|5+ 5I4L\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
14	4U3U\|1\|5+ 4U3U\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
15	4U3M\|1\|1+ 4U3M\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25s rRNA, 5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
16	4U55\|1\|1+ 4U55\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
17	4U4N\|1\|1+ 4U4N\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
18	4U4U\|1\|5+ 4U4U\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
19	5FCJ\|1\|5+ 5FCJ\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.1	2016-05-11
20	5DGV\|1\|1+ 5DGV\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(CPCP(8AN)(Pro)*(Pro))-3')	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
21	4U52\|1\|1+ 4U52\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
22	5DC3\|1\|5+ 5DC3\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
23	4U4Y\|1\|5+ 4U4Y\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
24	5FCJ\|1\|1+ 5FCJ\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.1	2016-05-11
25	4U3N\|1\|5+ 4U3N\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
26	5DAT\|1\|1+ 5DAT\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
27	4U4N\|1\|5+ 4U4N\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
28	5LYB\|1\|1+ 5LYB\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
29	4U6F\|1\|1+ 4U6F\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
30	4U50\|1\|5+ 4U50\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
31	4U50\|1\|1+ 4U50\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
32	4U55\|1\|5+ 4U55\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
33	4U3M\|1\|5+ 4U3M\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25s rRNA, 5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
34	5I4L\|1\|1+ 5I4L\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
35	4U4Z\|1\|5+ 4U4Z\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
36	4U3N\|1\|1+ 4U3N\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
37	4U53\|1\|5+ 4U53\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
38	5FCI\|1\|1+ 5FCI\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.4	2016-05-11
39	4U4Y\|1\|1+ 4U4Y\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
40	5APO\|1\|5+ 5APO\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	Electron microscopy	3.41	2015-12-16
41	5DAT\|1\|5+ 5DAT\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
42	4U51\|1\|1+ 4U51\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
43	5DC3\|1\|1+ 5DC3\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
44	4U51\|1\|5+ 4U51\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
45	4U6F\|1\|5+ 4U6F\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
46	5TGA\|1\|1+ 5TGA\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
47	5DGF\|1\|5+ 5DGF\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
48	5DGF\|1\|1+ 5DGF\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
49	4U53\|1\|1+ 4U53\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
50	5TGA\|1\|5+ 5TGA\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
51	4U56\|1\|1+ 4U56\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
52	5FCI\|1\|5+ 5FCI\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.4	2016-05-11
53	4U56\|1\|5+ 4U56\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
54	5TGM\|1\|1+ 5TGM\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
55	5APN\|1\|5+ 5APN\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	Electron microscopy	3.91	2015-12-16
56	5TGM\|1\|5+ 5TGM\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
57	5MC6\|1\|BQ+ 5MC6\|1\|BS	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	Electron microscopy	3.8	2017-01-18
58	4U4O\|1\|5+ 4U4O\|1\|8	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
59	5JUP\|1\|B+ 5JUP\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	Electron microscopy	3.5	2016-10-05
60	5M1J\|1\|14+ 5M1J\|1\|44	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Nonstop ribosomal complex bound with Dom34 and Hbs1	Electron microscopy	3.3	2017-01-18
61	4U4O\|1\|1+ 4U4O\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
62	5JUU\|1\|B+ 5JUU\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	Electron microscopy	4	2016-10-05
63	3JCT\|1\|1+ 3JCT\|1\|2	Large subunit ribosomal RNA + 5.8S ribosomal RNA	RDN25-1 rRNA, RDN58-1 rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	Electron microscopy	3.08	2016-06-01
64	5JUT\|1\|B+ 5JUT\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	Electron microscopy	4	2016-10-05
65	5GAK\|1\|1+ 5GAK\|1\|4	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S rRNA, 5.8S rRNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	Electron microscopy	3.88	2016-02-24
66	5JUO\|1\|B+ 5JUO\|1\|C	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	Electron microscopy	4	2016-10-05
67	4V7R\|1\|B1+ 4V7R\|1\|B3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
68	4V7R\|1\|D1+ 4V7R\|1\|D3	Large subunit ribosomal RNA + 5.8S ribosomal RNA	25S ribosomal RNA, 5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF02543 + RF00002	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09

Release history

Release	2.111
Date	2017-01-20

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_90506.13	NR_4.0_90506.12	2.111	(64) 4U4U\|1\|5+4U4U\|1\|8, 5APO\|1\|5+5APO\|1\|8, 3JCT\|1\|1+3JCT\|1\|2, 4U51\|1\|5+4U51\|1\|8, 5DGV\|1\|5+5DGV\|1\|8, 4U4N\|1\|5+4U4N\|1\|8, 4U56\|1\|5+4U56\|1\|8, 5JUO\|1\|B+5JUO\|1\|C, 4U4U\|1\|1+4U4U\|1\|4, 5APN\|1\|5+5APN\|1\|8, 4U51\|1\|1+4U51\|1\|4, 4U4N\|1\|1+4U4N\|1\|4, 4U56\|1\|1+4U56\|1\|4, 5TGA\|1\|5+5TGA\|1\|8, 5DGV\|1\|1+5DGV\|1\|4, 5I4L\|1\|5+5I4L\|1\|8, 4U4R\|1\|5+4U4R\|1\|8, 4V88\|1\|A5+4V88\|1\|A8, 4U50\|1\|5+4U50\|1\|8, 4U3U\|1\|5+4U3U\|1\|8, 4U55\|1\|5+4U55\|1\|8, 5TGA\|1\|1+5TGA\|1\|4, 5DGF\|1\|5+5DGF\|1\|8, 5I4L\|1\|1+5I4L\|1\|4, 4V88\|1\|A1+4V88\|1\|A4, 4U50\|1\|1+4U50\|1\|4, 4U3U\|1\|1+4U3U\|1\|4, 4U55\|1\|1+4U55\|1\|4, 4U4R\|1\|1+4U4R\|1\|4, 5LYB\|1\|5+5LYB\|1\|8, 5DGF\|1\|1+5DGF\|1\|4, 5GAK\|1\|1+5GAK\|1\|4, 4V7R\|1\|D1+4V7R\|1\|D3, 4U4Z\|1\|5+4U4Z\|1\|8, 4U3N\|1\|5+4U3N\|1\|8, 4U53\|1\|5+4U53\|1\|8, 4U4Q\|1\|5+4U4Q\|1\|8, 5LYB\|1\|1+5LYB\|1\|4, 5DC3\|1\|5+5DC3\|1\|8, 5FCJ\|1\|5+5FCJ\|1\|8, 4V7R\|1\|B1+4V7R\|1\|B3, 4U4Z\|1\|1+4U4Z\|1\|4, 4U3N\|1\|1+4U3N\|1\|4, 4U53\|1\|1+4U53\|1\|4, 4U4Q\|1\|1+4U4Q\|1\|4, 5JUU\|1\|B+5JUU\|1\|C, 5DC3\|1\|1+5DC3\|1\|4, 5FCJ\|1\|1+5FCJ\|1\|4, 4U4Y\|1\|5+4U4Y\|1\|8, 4U3M\|1\|5+4U3M\|1\|8, 4U52\|1\|5+4U52\|1\|8, 4U4O\|1\|5+4U4O\|1\|8, 4U6F\|1\|5+4U6F\|1\|8, 5JUT\|1\|B+	(4) 5M1J\|1\|14+5M1J\|1\|44, 5TGM\|1\|1+5TGM\|1\|4, 5TGM\|1\|5+5TGM\|1\|8, 5MC6\|1\|BQ+5MC6\|1\|BS	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_90506.13	NR_4.0_90506.14	2.112	(68) 4U6F\|1\|5+4U6F\|1\|8, 4U4N\|1\|1+4U4N\|1\|4, 5TGM\|1\|1+5TGM\|1\|4, 5APN\|1\|5+5APN\|1\|8, 4U4Q\|1\|5+4U4Q\|1\|8, 5DC3\|1\|5+5DC3\|1\|8, 4U4Y\|1\|5+4U4Y\|1\|8, 5FCI\|1\|5+5FCI\|1\|8, 4U51\|1\|1+4U51\|1\|4, 5I4L\|1\|5+5I4L\|1\|8, 4U53\|1\|5+4U53\|1\|8, 4U3M\|1\|5+4U3M\|1\|8, 5LYB\|1\|5+5LYB\|1\|8, 4U6F\|1\|1+4U6F\|1\|4, 4U4Y\|1\|1+4U4Y\|1\|4, 5FCI\|1\|1+5FCI\|1\|4, 4U3M\|1\|1+4U3M\|1\|4, 5LYB\|1\|1+5LYB\|1\|4, 4U3U\|1\|5+4U3U\|1\|8, 5TGA\|1\|5+5TGA\|1\|8, 4V88\|1\|A5+4V88\|1\|A8, 4U50\|1\|5+4U50\|1\|8, 5I4L\|1\|1+5I4L\|1\|4, 4U4Q\|1\|1+4U4Q\|1\|4, 5DC3\|1\|1+5DC3\|1\|4, 4U53\|1\|1+4U53\|1\|4, 4U4U\|1\|5+4U4U\|1\|8, 5DGV\|1\|5+5DGV\|1\|8, 3JCT\|1\|1+3JCT\|1\|2, 5JUU\|1\|B+5JUU\|1\|C, 4U56\|1\|5+4U56\|1\|8, 4U3U\|1\|1+4U3U\|1\|4, 5TGA\|1\|1+5TGA\|1\|4, 4V88\|1\|A1+4V88\|1\|A4, 4U50\|1\|1+4U50\|1\|4, 5GAK\|1\|1+5GAK\|1\|4, 4U4O\|1\|5+4U4O\|1\|8, 5DAT\|1\|5+5DAT\|1\|8, 4U52\|1\|5+4U52\|1\|8, 4U4U\|1\|1+4U4U\|1\|4, 5DGV\|1\|1+5DGV\|1\|4, 5JUT\|1\|B+5JUT\|1\|C, 4U56\|1\|1+4U56\|1\|4, 4U3N\|1\|5+4U3N\|1\|8, 5MC6\|1\|BQ+5MC6\|1\|BS, 4V7R\|1\|D1+4V7R\|1\|D3, 4U4Z\|1\|5+4U4Z\|1\|8, 5FCJ\|1\|5+5FCJ\|1\|8, 4U4O\|1\|1+4U4O\|1\|4, 5DAT\|1\|1+5DAT\|1\|4, 4U52\|1\|1+4U52\|1\|4, 4U4R\|1\|5+4U4R\|1\|8, 5DGF\|1\|5+5DGF\|1\|8, 5JUP\|1\|B+	(0)	(3) 5DGE\|1\|1+5DGE\|1\|4, 5DGE\|1\|5+5DGE\|1\|8, 5H4P\|1\|1+5H4P\|1\|4

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V7R\|1\|B1+4V7R\|1\|B3	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	3206
2	4V7R\|1\|D1+4V7R\|1\|D3	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	3206
3	4U4O\|1\|5+4U4O\|1\|8	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	3150
4	5FCJ\|1\|5+5FCJ\|1\|8	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.1	3150
5	5FCI\|1\|5+5FCI\|1\|8	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.4	3150
6	4U56\|1\|5+4U56\|1\|8	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	3150
7	4U4N\|1\|5+4U4N\|1\|8	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3150
8	5I4L\|1\|5+5I4L\|1\|8	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3150
9	5LYB\|1\|5+5LYB\|1\|8	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	3150
10	5TGA\|1\|5+5TGA\|1\|8	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	3152
11	4U4Y\|1\|5+4U4Y\|1\|8	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3150
12	4V88\|1\|A5+4V88\|1\|A8	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	3150
13	4U4R\|1\|5+4U4R\|1\|8	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	3150
14	4U3U\|1\|5+4U3U\|1\|8	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	3150
15	4U3N\|1\|5+4U3N\|1\|8	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3151
16	4U55\|1\|5+4U55\|1\|8	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3150
17	4U4Z\|1\|5+4U4Z\|1\|8	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3150
18	4U50\|1\|5+4U50\|1\|8	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3150
19	4U53\|1\|5+4U53\|1\|8	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	3150
20	4U51\|1\|5+4U51\|1\|8	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3150
21	4U4U\|1\|5+4U4U\|1\|8	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3150
22	4U4Q\|1\|5+4U4Q\|1\|8	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3150
23	4U3M\|1\|5+4U3M\|1\|8	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3150
24	4U52\|1\|5+4U52\|1\|8	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3150
25	4U6F\|1\|5+4U6F\|1\|8	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3150
26	5DGV\|1\|5+5DGV\|1\|8	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	3149
27	5TGM\|1\|5+5TGM\|1\|8	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	3150
28	5DGF\|1\|5+5DGF\|1\|8	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	3169
29	5DAT\|1\|5+5DAT\|1\|8	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	3169
30	5DC3\|1\|5+5DC3\|1\|8	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	3169
31	5APO\|1\|5+5APO\|1\|8	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	ELECTRON MICROSCOPY	3.41	3092
32	5APN\|1\|5+5APN\|1\|8	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	ELECTRON MICROSCOPY	3.91	3092
33	5M1J\|1\|14+5M1J\|1\|44	Nonstop ribosomal complex bound with Dom34 and Hbs1	ELECTRON MICROSCOPY	3.3	3295
34	5FCI\|1\|1+5FCI\|1\|4	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.4	3149
35	5DC3\|1\|1+5DC3\|1\|4	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	3149
36	5DAT\|1\|1+5DAT\|1\|4	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	3149
37	5DGF\|1\|1+5DGF\|1\|4	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	3149
38	5TGM\|1\|1+5TGM\|1\|4	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	3149
39	5DGV\|1\|1+5DGV\|1\|4	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	3148
40	5FCJ\|1\|1+5FCJ\|1\|4	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.1	3149
41	5TGA\|1\|1+5TGA\|1\|4	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	3151
42	5LYB\|1\|1+5LYB\|1\|4	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	3149
43	5I4L\|1\|1+5I4L\|1\|4	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3149
44	4U4N\|1\|1+4U4N\|1\|4	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3149
45	4U4Z\|1\|1+4U4Z\|1\|4	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3149
46	4U55\|1\|1+4U55\|1\|4	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3149
47	4U50\|1\|1+4U50\|1\|4	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3149
48	4U53\|1\|1+4U53\|1\|4	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	3149
49	4U51\|1\|1+4U51\|1\|4	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3149
50	4U4U\|1\|1+4U4U\|1\|4	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3149
51	4U4Q\|1\|1+4U4Q\|1\|4	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3149
52	4U52\|1\|1+4U52\|1\|4	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3149
53	4U6F\|1\|1+4U6F\|1\|4	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	3149
54	4U3N\|1\|1+4U3N\|1\|4	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3150
55	4V88\|1\|A1+4V88\|1\|A4	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	3149
56	4U4R\|1\|1+4U4R\|1\|4	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	3149
57	4U3U\|1\|1+4U3U\|1\|4	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	3149
58	4U3M\|1\|1+4U3M\|1\|4	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	3149
59	4U4Y\|1\|1+4U4Y\|1\|4	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	3149
60	4U56\|1\|1+4U56\|1\|4	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	3149
61	4U4O\|1\|1+4U4O\|1\|4	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	3149
62	5GAK\|1\|1+5GAK\|1\|4	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	ELECTRON MICROSCOPY	3.88	3165
63	5MC6\|1\|BQ+5MC6\|1\|BS	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	ELECTRON MICROSCOPY	3.8	3165
64	5JUT\|1\|B+5JUT\|1\|C	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	ELECTRON MICROSCOPY	4	3309
65	5JUU\|1\|B+5JUU\|1\|C	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	ELECTRON MICROSCOPY	4	3307
66	5JUP\|1\|B+5JUP\|1\|C	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	3.5	3309
67	5JUO\|1\|B+5JUO\|1\|C	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	ELECTRON MICROSCOPY	4	3309
68	3JCT\|1\|1+3JCT\|1\|2	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	ELECTRON MICROSCOPY	3.08	3058

Equivalence class NR_4.0_90506.13 Obsolete

Release history

Parents

Children