#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V88|1|A5+ 4V88|1|A8 (rep)25S rRNA, 5.8S rRNAThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
24V88|1|A1+ 4V88|1|A425S rRNA, 5.8S rRNAThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
34U4Q|1|5+ 4U4Q|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
44U3U|1|1+ 4U3U|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
54U4R|1|1+ 4U4R|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
64U4R|1|5+ 4U4R|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
74U52|1|5+ 4U52|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
84U4U|1|1+ 4U4U|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
94U4Z|1|1+ 4U4Z|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
104U4Q|1|1+ 4U4Q|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
115I4L|1|5+ 5I4L|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
124U3U|1|5+ 4U3U|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
134U3M|1|1+ 4U3M|1|425s rRNA, 5.8s rRNACrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
144U55|1|1+ 4U55|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
154U4N|1|1+ 4U4N|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
164U4U|1|5+ 4U4U|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
175FCJ|1|5+ 5FCJ|1|825S ribosomal RNA, 5.8S ribosomal RNAStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
184U52|1|1+ 4U52|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
195DC3|1|5+ 5DC3|1|825S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
204U4Y|1|5+ 4U4Y|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
215FCJ|1|1+ 5FCJ|1|425S ribosomal RNA, 5.8S ribosomal RNAStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
224U3N|1|5+ 4U3N|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
234U4N|1|5+ 4U4N|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
244U6F|1|1+ 4U6F|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
254U50|1|5+ 4U50|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
264U50|1|1+ 4U50|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
274U55|1|5+ 4U55|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
284U3M|1|5+ 4U3M|1|825s rRNA, 5.8s rRNACrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
295I4L|1|1+ 5I4L|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
304U4Z|1|5+ 4U4Z|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
314U3N|1|1+ 4U3N|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
324U53|1|5+ 4U53|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
335FCI|1|1+ 5FCI|1|425S ribosomal RNA, 5.8S ribosomal RNAStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
344U4Y|1|1+ 4U4Y|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
355APO|1|5+ 5APO|1|825S ribosomal RNA, 5.8S ribosomal RNAStructure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.412015-12-16
364U51|1|1+ 4U51|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
375DC3|1|1+ 5DC3|1|425S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
384U51|1|5+ 4U51|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
394U6F|1|5+ 4U6F|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
404U53|1|1+ 4U53|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
414U56|1|1+ 4U56|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
425FCI|1|5+ 5FCI|1|825S ribosomal RNA, 5.8S ribosomal RNAStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
434U56|1|5+ 4U56|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
445APN|1|5+ 5APN|1|825S rRNA, 5.8S rRNAStructure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.912015-12-16
454U4O|1|5+ 4U4O|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
464U4O|1|1+ 4U4O|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
473JCT|1|1+ 3JCT|1|2RDN25-1 rRNA, RDN58-1 rRNACryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.082016-06-01
485GAK|1|1+ 5GAK|1|425S rRNA, 5.8S rRNAYeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.882016-02-24
494V7R|1|B1+ 4V7R|1|B325S ribosomal RNA, 5.8S ribosomal RNAYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
504V7R|1|D1+ 4V7R|1|D325S ribosomal RNA, 5.8S ribosomal RNAYeast 80S ribosome.X-RAY DIFFRACTION42014-07-09

Release history

Release2.812.822.832.842.852.862.872.882.892.90
Date2016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-26

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V7R|1|D1+4V7R|1|D3Yeast 80S ribosome.X-RAY DIFFRACTION43206
24V7R|1|B1+4V7R|1|B3Yeast 80S ribosome.X-RAY DIFFRACTION43206
34U4O|1|1+4U4O|1|4Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63149
45DC3|1|1+5DC3|1|4Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253149
54U4Y|1|1+4U4Y|1|4Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
64U3M|1|1+4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
74U3U|1|1+4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93149
84U4R|1|1+4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83149
94V88|1|A1+4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33149
104U3N|1|1+4U3N|1|4Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
114U4N|1|1+4U4N|1|4Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
124U55|1|1+4U55|1|4Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
134U4Z|1|1+4U4Z|1|4Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
144U53|1|1+4U53|1|4Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33149
154U50|1|1+4U50|1|4Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
164U52|1|1+4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
174U4Q|1|1+4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
184U4U|1|1+4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
194U6F|1|1+4U6F|1|4Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
204U51|1|1+4U51|1|4Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
214U56|1|1+4U56|1|4Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453149
225FCJ|1|1+5FCJ|1|4Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13149
235I4L|1|1+5I4L|1|4Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
245FCI|1|1+5FCI|1|4Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43149
255GAK|1|1+5GAK|1|4Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.883165
265APN|1|5+5APN|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.913092
275APO|1|5+5APO|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413092
285DC3|1|5+5DC3|1|8Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253169
295FCI|1|5+5FCI|1|8Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43150
305FCJ|1|5+5FCJ|1|8Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13150
314U3N|1|5+4U3N|1|8Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23151
324V88|1|A5+4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33150
334U4R|1|5+4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83150
344U3U|1|5+4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93150
354U4Y|1|5+4U4Y|1|8Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
364U3M|1|5+4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
374U6F|1|5+4U6F|1|8Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
384U52|1|5+4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
394U4Q|1|5+4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
404U4U|1|5+4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
414U51|1|5+4U51|1|8Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
424U53|1|5+4U53|1|8Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33150
434U50|1|5+4U50|1|8Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
444U4Z|1|5+4U4Z|1|8Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
454U55|1|5+4U55|1|8Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
464U4N|1|5+4U4N|1|8Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
474U56|1|5+4U56|1|8Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453150
484U4O|1|5+4U4O|1|8Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63150
495I4L|1|5+5I4L|1|8Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
503JCT|1|1+3JCT|1|2Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.083058